PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0161s0140.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 274aa MW: 30018.3 Da PI: 5.769

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0161s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	32.8	1.3e-10	154	201	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i ++++ L++l+P + +k Ka +L + ++YI+sLq SapurV1A.0161s0140.1.p 154 SHSLAERARREKISERMNMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 201 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	5.67E-9	148	205	No hit	No description
SuperFamily	SSF47459	1.57E-17	148	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-18	150	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.643	150	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.6E-8	154	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.9E-10	156	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MDPPLINETS FSAANPSSYT LAEIWPFPPP PPPTRSGLRM DNLADPDGSL EESTLTDQSS 60 ANGTRIRKTR DFSSEKDDST KIVSTTTSAN DLNDSNGKRR KITGSRSVND DSRAETEASS 120 AANNKSAEQS SKASEPPKQD YIHVRARRGQ ATDSHSLAER ARREKISERM NMLQDLVPGC 180 NKVIGKALVL DEIINYIQSL QCQVEFLSMK LEAVNSRMNT STTIEGLHPK DLGAQPFVAT 240 GMLFSPQPTR EYVQGSQSEW LHMQVGGSFE RAL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0161s0140.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002321546.2	1e-180	transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	1e-88	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9IEI7	1e-179	B9IEI7_POPTR; Uncharacterized protein
STRING	POPTR_0015s07930.1	1e-180	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-83	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0161s0140.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]