PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0158s0390.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 348aa MW: 38767.2 Da PI: 6.4146 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50 | 6.7e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grW +eEde+l+++++ G g+W++ +++ g+ R++k+c++rw +yl SapurV1A.0158s0390.1.p 14 KGRWAAEEDEKLAKYIQANGEGSWRSLPKHAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49.4 | 1e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++++v++ + lG++ W++Ia+ ++ gRt++++k++w+++l SapurV1A.0158s0390.1.p 67 RGNISAEEEDIIVKLQASLGNR-WSLIASNLP-GRTDNEIKNYWNSHL 112 7899******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.324 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-26 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.3E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.24E-7 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.368 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-23 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-13 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.22E-10 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MGRAPCCEKV GLKKGRWAAE EDEKLAKYIQ ANGEGSWRSL PKHAGLLRCG KSCRLRWINY 60 LRADLKRGNI SAEEEDIIVK LQASLGNRWS LIASNLPGRT DNEIKNYWNS HLSRRIPSFR 120 SEEKGGRAGK FPAKKNKISH STPKDVTRAS TRKPLVENNT SNCYNSSIEA IQSLHKPTIE 180 KETLSSAIKD TIIQDPCKED KEQTGRRMVG SSGEKETLVW SKSDEKTSGN SLLPSPSVGK 240 IENDQSSGPF YHGIDNALCF NEVTDPNGGS TLNEERQKGL VVHTEESGEW DSCSSIRTPG 300 FEYWSWDDVM GGDDMLSWLR ESDEVEGESD QKLEEAMDHE KKNAMAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-23 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 4e-23 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 3e-23 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-23 | 12 | 116 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0158s0390.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024450981.1 | 1e-168 | transcription factor MYB63 | ||||
TrEMBL | B9GSG5 | 1e-167 | B9GSG5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s19920.1 | 1e-148 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 5e-70 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0158s0390.1.p |