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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0157s0170.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 242aa MW: 27577.3 Da PI: 10.0449 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.9 | 9.9e-32 | 24 | 74 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ SapurV1A.0157s0170.2.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 74 79***********************************************95 PP | |||||||
2 | K-box | 114.2 | 1.3e-37 | 92 | 188 | 4 | 100 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqee 90 s++ s++ea+a+ +qqe+akL+++i nLq+++R++lGe+L++Ls+keL++Le +Lek++++iRskKnell+++ie++qk+e +l+++ SapurV1A.0157s0170.2.p 92 SNNGSVSEANAQFYQQEAAKLRSQIGNLQNSNRNMLGESLSTLSVKELKSLEIKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNN 178 444459********************************************************************************* PP K-box 91 nkaLrkklee 100 n+ Lr+k++e SapurV1A.0157s0170.2.p 179 NQLLRAKIAE 188 *******986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.2E-40 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.459 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.62E-44 | 17 | 93 | No hit | No description |
SuperFamily | SSF55455 | 3.66E-33 | 17 | 89 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 8.9E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.7E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.5E-28 | 100 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.153 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MAYQNESQLS SPLRKLGRGK VEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYSNNSVKST IERYKKACAD SSNNGSVSEA NAQFYQQEAA KLRSQIGNLQ 120 NSNRNMLGES LSTLSVKELK SLEIKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ 180 LLRAKIAENE RKRQNMNLMP GGASFEIMQP QPFDSRNYSQ VHGLPPANHY SHEDQMSLQL 240 V* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
5f28_A | 5e-20 | 16 | 100 | 1 | 87 | MEF2C |
5f28_B | 5e-20 | 16 | 100 | 1 | 87 | MEF2C |
5f28_C | 5e-20 | 16 | 100 | 1 | 87 | MEF2C |
5f28_D | 5e-20 | 16 | 100 | 1 | 87 | MEF2C |
6c9l_A | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-20 | 16 | 84 | 1 | 69 | Myocyte-specific enhancer factor 2B |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0157s0170.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ714386 | 0.0 | JQ714386.1 Populus simonii x Populus nigra isolate A flowering locus C (FLC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011002033.1 | 1e-166 | PREDICTED: floral homeotic protein AGAMOUS-like | ||||
Refseq | XP_011002034.1 | 1e-166 | PREDICTED: floral homeotic protein AGAMOUS-like | ||||
Refseq | XP_011002035.1 | 1e-166 | PREDICTED: floral homeotic protein AGAMOUS-like | ||||
Swissprot | Q40872 | 1e-136 | AG_PANGI; Floral homeotic protein AGAMOUS | ||||
TrEMBL | O65112 | 1e-162 | O65112_POPTR; AGAMOUS homolog | ||||
STRING | EOY27872 | 1e-150 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G18960.1 | 1e-117 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0157s0170.2.p |