PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0154s0180.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 313aa    MW: 33868.3 Da    PI: 5.1792
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0154s0180.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS40.34.8e-1374127356
                    GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlars 56 
                              lLl+cAe+v+ ++l+ a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+++s
  SapurV1A.0154s0180.2.p  74 GLLLQCAECVAMDNLNYATDLLPEIVELSSPFGSSPERVGAYFAHALQARVVGS 127
                             58*************************************************985 PP
2GRAS198.25e-6112731295291
                    GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
                               +aNqaI +a++ge+rvH+iDfdi+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfef++l
  SapurV1A.0154s0180.2.p 127 SCLANQAIFQALDGEDRVHVIDFDIMQGLQWPGLFHILASRPKKIRSVRITGFGS----SSELLESTGRRLADFASSLGLPFEFHPL 209
                             679****************************************************....9**************************9 PP

                    GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
                               k  +  +l++L v+p+Ea++V++++  h l+d ++s       +Lkl+  l+Pk+++ veq+++h ++sFl rf+eal+yysalf
  SapurV1A.0154s0180.2.p 210 EGKIGNVTDLSQLGVRPREAIVVHWMH--HCLYDVTGSDLG----TLKLLTLLRPKLITTVEQDLSH-GGSFLGRFVEALHYYSALF 289
                             777777779*****************9..888888888888....**********************.789**************** PP

                    GRAS 269 dsleaklpreseerikvErellg 291
                             d+l  +++ +s er++vE++l+g
  SapurV1A.0154s0180.2.p 290 DALGDGFGVDSVERHMVEQQLFG 312
                             ********************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.4031312IPR005202Transcription factor GRAS
PfamPF035141.7E-58127312IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MLQSLIPQSP INSKDPNNSS SSTMKSKRAA GDLTAADSSS EDPSSKRASY EKPTTETDCR  60
GDDGGEASGL RLLGLLLQCA ECVAMDNLNY ATDLLPEIVE LSSPFGSSPE RVGAYFAHAL  120
QARVVGSCLA NQAIFQALDG EDRVHVIDFD IMQGLQWPGL FHILASRPKK IRSVRITGFG  180
SSSELLESTG RRLADFASSL GLPFEFHPLE GKIGNVTDLS QLGVRPREAI VVHWMHHCLY  240
DVTGSDLGTL KLLTLLRPKL ITTVEQDLSH GGSFLGRFVE ALHYYSALFD ALGDGFGVDS  300
VERHMVEQQL FG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-987831125296Protein SCARECROW
5b3h_A6e-987831124295Protein SCARECROW
5b3h_D6e-987831124295Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0154s0180.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442976.10.0scarecrow-like protein 23 isoform X2
SwissprotQ9FHZ11e-121SCL23_ARATH; Scarecrow-like protein 23
TrEMBLA0A2K1X9C00.0A0A2K1X9C0_POPTR; GRAS family protein
STRINGPOPTR_0016s02030.11e-175(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-109GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]