PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0152s0560.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 761aa    MW: 86760.5 Da    PI: 8.9034
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0152s0560.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.43.1e-2043117189
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             +fY+ YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+++++gkw+v++++++HnH
  SapurV1A.0152s0560.2.p  43 EFYSVYATHVGFKTRTGQLYRSRTDGSVASRRFVCSKEGFQLS--------------SRTGCPAFIRVQRKDSGKWVVDQIHKDHNH 115
                             6***************************************876..............589*************************** PP

                    FAR1  88 el 89 
                             el
  SapurV1A.0152s0560.2.p 116 EL 117
                             *9 PP
2FAR167.82.8e-21198273291
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                             fY +YA e+GF++r+ +  +sk++g+it+r++vCskeg++++              +r+gC+a +++k++++g+w+v++l+++HnH+
  SapurV1A.0152s0560.2.p 198 FYIRYADEAGFKTRIGQLFRSKNDGSITSRRLVCSKEGFQHP--------------SRVGCRAFMRIKRQDSGTWMVDRLQKDHNHD 270
                             9**************************************999..............4899*************************** PP

                    FAR1  89 lap 91 
                             l p
  SapurV1A.0152s0560.2.p 271 LEP 273
                             975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.3E-1643117IPR004330FAR1 DNA binding domain
PfamPF031016.7E-17198273IPR004330FAR1 DNA binding domain
PfamPF105511.4E-28372464IPR018289MULE transposase domain
PROSITE profilePS5096610.831646682IPR007527Zinc finger, SWIM-type
PfamPF044347.0E-7655681IPR007527Zinc finger, SWIM-type
SMARTSM005752.6E-6657684IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MIVRAHPLSV ARAKDNVNVQ GARGSGLEPR IGLEFDSADD AREFYSVYAT HVGFKTRTGQ  60
LYRSRTDGSV ASRRFVCSKE GFQLSSRTGC PAFIRVQRKD SGKWVVDQIH KDHNHELGDV  120
EESRPPILPQ RTPTGRKSSA KVSSKSKLKL LAEVDGGQPC LSGSISFKRV KTGGDGGQPK  180
AEPYAGLVFS STDEAYHFYI RYADEAGFKT RIGQLFRSKN DGSITSRRLV CSKEGFQHPS  240
RVGCRAFMRI KRQDSGTWMV DRLQKDHNHD LEPRTRTNMK NSTASKKFIG GVNGGLDTLN  300
LSEINNGARP ICSQGNNIGS EWYHLLLDYC QSKQAKDTGF FYSVEVGNGI CMSVFWADGR  360
SRFACSQFGD AIVVDTSYRK TNYVVPFATF VGVNHHKQPV LLGCALIANE SKESFIWLFQ  420
TWLRAMSGCR PKSIIADQDM AIQQAIAHVF PGTRHRFSTW QIREKERENL RSMPNEFKYE  480
YEKCIYDSQT NADFNTMWND LVNKYGLKEN VWLKEMYEKR ESWVPLYLRG TFFAGIPINE  540
SMESIFGIFL NAETPLGEFI PRYEQGLEQR REEERKEDFN CSNLQALLQT KEPIEEQCRR  600
LYTPNVFQIF QKELLQCYNY LGIKTYEEGS IIRYSVRRCG NDSEKLTVTF SASNLNVSCS  660
CQMFESEGVL CRHVLRVFIL LNMREIPSRY LLHRWTRNAE HGIACDFDPG VSCQELKSLM  720
VWSLRETACK YIESGTSSLA KYRLACEIMR EGAKKVCRQR *
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0152s0560.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006378129.10.0protein FAR1-RELATED SEQUENCE 7
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLU5G0Z90.0U5G0Z9_POPTR; Uncharacterized protein
STRINGPOPTR_0010s03000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]