PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 789aa MW: 89845.8 Da PI: 8.8409

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0152s0560.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.3	3.3e-20	71	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 +fY+ YA++vGF++r+ + ++s+++g++ +r+fvCskeg++ + +rtgC a ++v+++++gkw+v++++++HnH SapurV1A.0152s0560.1.p 71 EFYSVYATHVGFKTRTGQLYRSRTDGSVASRRFVCSKEGFQLS--------------SRTGCPAFIRVQRKDSGKWVVDQIHKDHNH 143 6*************************************876..............589************************* PP FAR1 88 el 89 el SapurV1A.0152s0560.1.p 144 EL 145 *9 PP
2	FAR1	67.7	3e-21	226	301	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YA e+GF++r+ + +sk++g+it+r++vCskeg++++ +r+gC+a +++k++++g+w+v++l+++HnH+ SapurV1A.0152s0560.1.p 226 FYIRYADEAGFKTRIGQLFRSKNDGSITSRRLVCSKEGFQHP--------------SRVGCRAFMRIKRQDSGTWMVDRLQKDHNHD 298 9************************************999..............4899************************* PP FAR1 89 lap 91 l p SapurV1A.0152s0560.1.p 299 LEP 301 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.5E-16	71	145	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	7.1E-17	226	301	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-28	400	492	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.831	674	710	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	7.3E-7	683	709	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.6E-6	685	712	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MVFVSTPSLF SNTRSSSSDP YREEHGNAMI VRAHPLSVAR AKDNVNVQGA RGSGLEPRIG 60 LEFDSADDAR EFYSVYATHV GFKTRTGQLY RSRTDGSVAS RRFVCSKEGF QLSSRTGCPA 120 FIRVQRKDSG KWVVDQIHKD HNHELGDVEE SRPPILPQRT PTGRKSSAKV SSKSKLKLLA 180 EVDGGQPCLS GSISFKRVKT GGDGGQPKAE PYAGLVFSST DEAYHFYIRY ADEAGFKTRI 240 GQLFRSKNDG SITSRRLVCS KEGFQHPSRV GCRAFMRIKR QDSGTWMVDR LQKDHNHDLE 300 PRTRTNMKNS TASKKFIGGV NGGLDTLNLS EINNGARPIC SQGNNIGSEW YHLLLDYCQS 360 KQAKDTGFFY SVEVGNGICM SVFWADGRSR FACSQFGDAI VVDTSYRKTN YVVPFATFVG 420 VNHHKQPVLL GCALIANESK ESFIWLFQTW LRAMSGCRPK SIIADQDMAI QQAIAHVFPG 480 TRHRFSTWQI REKERENLRS MPNEFKYEYE KCIYDSQTNA DFNTMWNDLV NKYGLKENVW 540 LKEMYEKRES WVPLYLRGTF FAGIPINESM ESIFGIFLNA ETPLGEFIPR YEQGLEQRRE 600 EERKEDFNCS NLQALLQTKE PIEEQCRRLY TPNVFQIFQK ELLQCYNYLG IKTYEEGSII 660 RYSVRRCGND SEKLTVTFSA SNLNVSCSCQ MFESEGVLCR HVLRVFILLN MREIPSRYLL 720 HRWTRNAEHG IACDFDPGVS CQELKSLMVW SLRETACKYI ESGTSSLAKY RLACEIMREG 780 AKKVCRQR*

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MVFVSTPSLF SNTRSSSSDP YREEHGNAMI VRAHPLSVAR AKDNVNVQGA RGSGLEPRIG  60
LEFDSADDAR EFYSVYATHV GFKTRTGQLY RSRTDGSVAS RRFVCSKEGF QLSSRTGCPA  120
FIRVQRKDSG KWVVDQIHKD HNHELGDVEE SRPPILPQRT PTGRKSSAKV SSKSKLKLLA  180
EVDGGQPCLS GSISFKRVKT GGDGGQPKAE PYAGLVFSST DEAYHFYIRY ADEAGFKTRI  240
GQLFRSKNDG SITSRRLVCS KEGFQHPSRV GCRAFMRIKR QDSGTWMVDR LQKDHNHDLE  300
PRTRTNMKNS TASKKFIGGV NGGLDTLNLS EINNGARPIC SQGNNIGSEW YHLLLDYCQS  360
KQAKDTGFFY SVEVGNGICM SVFWADGRSR FACSQFGDAI VVDTSYRKTN YVVPFATFVG  420
VNHHKQPVLL GCALIANESK ESFIWLFQTW LRAMSGCRPK SIIADQDMAI QQAIAHVFPG  480
TRHRFSTWQI REKERENLRS MPNEFKYEYE KCIYDSQTNA DFNTMWNDLV NKYGLKENVW  540
LKEMYEKRES WVPLYLRGTF FAGIPINESM ESIFGIFLNA ETPLGEFIPR YEQGLEQRRE  600
EERKEDFNCS NLQALLQTKE PIEEQCRRLY TPNVFQIFQK ELLQCYNYLG IKTYEEGSII  660
RYSVRRCGND SEKLTVTFSA SNLNVSCSCQ MFESEGVLCR HVLRVFILLN MREIPSRYLL  720
HRWTRNAEHG IACDFDPGVS CQELKSLMVW SLRETACKYI ESGTSSLAKY RLACEIMREG  780
AKKVCRQR*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0152s0560.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006378129.1	0.0	protein FAR1-RELATED SEQUENCE 7
Swissprot	Q9M8J3	0.0	FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBL	U5G0Z9	0.0	U5G0Z9_POPTR; Uncharacterized protein
STRING	POPTR_0010s03000.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	0.0	FAR1-related sequence 7

Link Out ? help Back to Top
Phytozome	SapurV1A.0152s0560.1.p

Publications ? help Back to Top
Ritter A, et al. The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis. Nat Commun, 2017. 8: p. 15235 [PMID:28492275] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]