PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0152s0090.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 1105aa MW: 120940 Da PI: 4.5924 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.7 | 1.8e-10 | 948 | 990 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rW++++ el++++++q+G++ + I + ++ gRt+ q+k+++ k SapurV1A.0152s0090.3.p 948 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 990 59*******************.*********.***********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15963 | 1.5E-27 | 940 | 1022 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.8E-6 | 945 | 990 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 10.733 | 945 | 996 | IPR017884 | SANT domain |
SMART | SM00717 | 1.7E-7 | 946 | 994 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.17E-10 | 948 | 997 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.88E-6 | 949 | 990 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1105 aa Download sequence Send to blast |
MDPDLDPFDD ILPKPTLTNA RSAGKFQPKA KPRPKKVEFV PIPSIPPSKA KEKAVAASQT 60 SLDTAISVQP VGIMDEKLTG QIGSLSPSAP TGTKEPLKSN DGKTKLVEES GSPLATSDMV 120 GVKEPQKYKE GLPSWEIGSL EAANLTPVRG NDAGSVGAVD SEADCNGNQK YNFVKSAGAA 180 GSLGFDSDLL DDIIPKSLKT RAGGKFKPKV KPWQRNENPE PVSSSPSKCA EEEPKAHSQK 240 TQSTEPVYVA NTRMNPIGRT LLQQGNVESN EPSKDSEVLY LNSKSCLELV NPSSDNIATE 300 EFVCTHNTQL SEMKSGNDVG LNSRFVESAI EVGSMRLDLD AFDYTDPQLA ISIGRAADKL 360 QSKVKACPRK GTSELAASAV PVVEKVAGLT STVLDNTPPT ESSGAENGRL THLVCEPLME 420 SARTKEPGRN NSKALLSPPE MLATVSCEKD PKGKSSFPVK NFFDSSASIK YDVVATNFIS 480 SNEAAVQVDN GRLELEESGA FPGLETPGFL SPDVMESVMA PPTDVQHVPS ETINIEGSSV 540 GAFPSDNIVD SLSTHPGDFI PPDTCTSEIQ MNQELENLTE TNVTGIHQED ASDLPEKETS 600 SSRKRKDAPA SYSSWKSQKA SLAGDMNEHD RSTRHPRKQV AAPQLGDEPE DEGHGNGGLP 660 LENIDDDSSM HSSNFIPVDP CTLEAQVDQN QKYFTESNCL ANANVVHSED VPVVPGKESS 720 KSGKRKVFSA SNCSRKSKKS SLAAGTQVVD ELDEAQDNGG LPAEPPGSSV DEEDNDSEPG 780 GDEERDDENR VQIASRKKRA SKKSKEPVTE KEKQVRKCNR SNDTPEQPMQ EPRKKFSHST 840 RRNKRCVKKD LLDMPEDEID FKRLPIRDII LFAEYKERLS VKEATTSKIP PNNQSSDNPF 900 HGGYSHYEED EFASEQDKTH DDDQTYVRAQ PSSSLFNHQS FTDRAPNSRW SKQDTELFYE 960 GIQQFGTDLS MIQQLFPGRT RHQVKLKYKK EERQNPLRLH EALSRRPKDN SYFEKLIEQL 1020 QEVAAIREEQ ESYKDDLVDV SGEEDAELNA ENNDEVTKPK QDEDVGVEED QEENVVAEDH 1080 HGPQKSGVSD EDVGDIWGSY GSEF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 724 | 738 | RKVFSASNCSRKSKK |
2 | 797 | 805 | KRASKKSKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0152s0090.3.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC214213 | 1e-170 | AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024466754.1 | 0.0 | uncharacterized protein LOC7475967 isoform X4 | ||||
TrEMBL | A0A2K1YMI7 | 0.0 | A0A2K1YMI7_POPTR; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39160.1 | 2e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0152s0090.3.p |