PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0152s0090.23.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 852aa    MW: 94150 Da    PI: 4.4585
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0152s0090.23.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.11.3e-10695737246
                              SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rW++++ el++++++q+G++  + I + ++ gRt+ q+k+++ k
  SapurV1A.0152s0090.23.p 695 SRWSKQDTELFYEGIQQFGTD-LSMIQQLFP-GRTRHQVKLKYKK 737
                              59*******************.*********.***********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159631.1E-27687769No hitNo description
PROSITE profilePS5129310.733692743IPR017884SANT domain
Gene3DG3DSA:1.10.10.603.5E-6692737IPR009057Homeodomain-like
SMARTSM007171.7E-7693741IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-10695744IPR009057Homeodomain-like
CDDcd001671.37E-6696737No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 852 aa     Download sequence    Send to blast
MNPIGRTLLQ QGNVESNEPS KDSEVLYLNS KSCLELVNPS SDNIATEEFV CTHNTQLSEM  60
KSGNDVGLNS RFVESAIEVG SMRLDLDAFD YTDPQLAISI GRAADKLQSK VKACPRKGTS  120
ELAASAVPVV EKVAGLTSTV LDNTPPTESS GAENGRLTHL VCEPLMESAR TKEPGRNNSK  180
ALLSPPEMLA TVSCEKDPKG KSSFPVKNFF DSSASIKYDV VATNFISSNE AAVQVDNGRL  240
ELEESGAFPG LETPGFLSPD VMESVMAPPT DVQHVPSETI NIEGSSVGAF PSDNIVDSLS  300
THPGDFIPPD TCTSEIQMNQ ELENLTETNV TGIHQEDASD LPEKETSSSR KRKDAPASYS  360
SWKSQKASLA GDMNEHDRST RHPRKQVAAP QLGDEPEDEG HGNGGLPLEN IDDDSSMHSS  420
NFIPVDPCTL EAQVDQNQKY FTESNCLANA NVVHSEDVPV VPGKESSKSG KRKVFSASNC  480
SRKSKKSSLA AGTQVVDELD EAQDNGGLPA EPPGSSVDEE DNDSEPGGDE ERDDENRVQI  540
ASRKKRASKK SKEPVTEKEK QVRKCNRSND TPEQPMQEPR KKFSHSTRRN KRCVKKDLLD  600
MPEDEIDFKR LPIRDIILFA EYKERLSVKE ATTSKIPPNN QSSDNPFHGG YSHYEEDEFA  660
SEQDKTHDDD QTYVRAQPSS SLFNHQSFTD RAPNSRWSKQ DTELFYEGIQ QFGTDLSMIQ  720
QLFPGRTRHQ VKLKYKKEER QNPLRLHEAL SRRPKDNSYF EKLIEQLQEV AAIREEQESY  780
KDDLVDVSGE EDAELNAENN DEVTKPKQDE DVGVEEDQEE NVVAEDHHGP QKSGVSDEDV  840
GDIWGSYGSE F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1471485RKVFSASNCSRKSKK
2544552KRASKKSKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0152s0090.23.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142131e-156AC214213.1 Populus trichocarpa clone POP024-E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466754.10.0uncharacterized protein LOC7475967 isoform X4
TrEMBLA0A2K1YMI70.0A0A2K1YMI7_POPTR; Uncharacterized protein
TrEMBLA0A3N7FPD90.0A0A3N7FPD9_POPTR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-46MYB_related family protein