PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0151s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 337aa    MW: 37182.6 Da    PI: 6.7916
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0151s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT++Ed +l+d++++ G ++Wk+ ++  g++R++k+c++rw +yl
  SapurV1A.0151s0280.1.p 14 KGPWTPDEDTKLIDYIERNGHENWKALPNLAGLNRCGKSCRLRWINYL 61
                            79********************************************97 PP
2Myb_DNA-binding50.54.6e-1667111147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg ++++E+  +v+++  lG++ W++Ia++++ gRt++++k++w+++
  SapurV1A.0151s0280.1.p  67 RGEFSEDEERVIVNLHSALGNK-WSRIANHLP-GRTDNDIKNFWNTH 111
                             899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-22564IPR009057Homeodomain-like
PROSITE profilePS5129415.865961IPR017930Myb domain
SuperFamilySSF466898.24E-3012108IPR009057Homeodomain-like
SMARTSM007171.8E-131363IPR001005SANT/Myb domain
PfamPF002494.6E-161461IPR001005SANT/Myb domain
CDDcd001671.57E-101661No hitNo description
PROSITE profilePS5129425.97962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.2E-2565116IPR009057Homeodomain-like
SMARTSM007173.0E-1566114IPR001005SANT/Myb domain
PfamPF002492.6E-1467111IPR001005SANT/Myb domain
CDDcd001672.69E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 337 aa     Download sequence    Send to blast
MVRSPCSHAS ALKKGPWTPD EDTKLIDYIE RNGHENWKAL PNLAGLNRCG KSCRLRWINY  60
LRPDVKRGEF SEDEERVIVN LHSALGNKWS RIANHLPGRT DNDIKNFWNT HIRKKLLQMG  120
IDPNTHKPRI DPSHFLNLSQ LLGAAQSGNI ASPWNSFLKL QAEVTQLANI QLVRNLLQMM  180
NTNTLTNIEN NNSLLGSQNP SLFRALVNGT TISNTKEPAP ISQDLANPPV TPQANNGFQD  240
ISNLWGSCEG GFGPEALNIN GNTWSSSYGI QAGHNPLPAL VSASPSPVTS IVHQTESKGD  300
PSNYSTTGTP TSTIFEAWEK LIDDDNISSY WNDILD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0151s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024452335.10.0transcription factor MYB39 isoform X1
TrEMBLA0A3N7FMV50.0A0A3N7FMV5_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09300.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.13e-76myb domain protein 93