PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0151s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 308aa    MW: 34005.9 Da    PI: 8.1461
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0151s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-13100151155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +r++h ++Er+RR+ +N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  SapurV1A.0151s0200.1.p 100 QRMTHIAVERNRRKLMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                             79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-1698169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-1298155No hitNo description
Gene3DG3DSA:4.10.280.109.0E-1498155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.65999150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-10105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MALQALSSND FLNFILYDTI SATPCTSHAS LETASLLLES LKPQDHDVSV NSSNSLISEK  60
SCSVGREAVS RRHNLLAVQG KKKRRRKPRV CKNKEEAETQ RMTHIAVERN RRKLMNEHLA  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EQLLQSFEAK KLELQRGSAG PNYSTENATA  180
TSEFPPAAPP PFAQFFVCPQ YTWSQIPGKF TSNTAASIAD IEATLIETHA NLRILTRRSP  240
RQLSKLVAGF LTLYLTVLHI NVTTMDQLVL YSISAKLEEG CQLTSADDLA GAVHHMLRII  300
EQEAAPC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18085KKKRRR
28086KKKRRRK
38087KKKRRRKP
48186KKRRRK
5100111RMTHIAVERNRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0151s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006385664.20.0transcription factor bHLH71
SwissprotQ56XR02e-70BH071_ARATH; Transcription factor bHLH71
TrEMBLA0A2K2B4790.0A0A2K2B479_POPTR; Uncharacterized protein
STRINGPOPTR_0003s09200.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.15e-62bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]