PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0147s0490.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 482aa    MW: 53475.3 Da    PI: 5.9823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0147s0490.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538e-175397147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  SapurV1A.0147s0490.2.p 53 RERWTEEEHKKFIEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 97
                            78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.32E-1647101IPR009057Homeodomain-like
PROSITE profilePS5129421.73548102IPR017930Myb domain
TIGRFAMsTIGR015579.6E-1751100IPR006447Myb domain, plants
SMARTSM007171.6E-1352100IPR001005SANT/Myb domain
PfamPF002493.4E-145396IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-95393IPR009057Homeodomain-like
CDDcd001671.95E-105598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 482 aa     Download sequence    Send to blast
MKDQCGGTQL NLDGISLGDA LNNTTGQQLK EQFSSWSDYS PKERKPYTIT KQRERWTEEE  60
HKKFIEALKL YGRAWRRIEE HVGTKTAVQI RSHAQKFFSK VVRESGGSST SSVEPIEIPP  120
PRPKRKPTHP YPRKLAHSLE KELLIPEKSP RSSSLNFSIS EQENQSPTSV LSAVGSDALG  180
STDSDAPNRS LSPVSFGGGV QHADSSPDED GSPSVATASS VPDEQFPKVE KLDSYPRENV  240
SSEEHVVVEE TSTRSLKLFG RTVFVTESHK PSSPNMGTSK LSPLEAAEEK LVRPLTLNNV  300
DTQFLSGNGE PTWRPLSHGS HGSLCFMQFQ KENSSPAQND PATLMPWWTS YGATSFPHIP  360
FHKQEPAMDN LDSKGDEVQD KEIPKEVSWT GSNSGPVSEG ENVDKNMDAE TESQFFYKEK  420
ELSPIFELNL GKKSASSESK VINEKCSKGF VPYKKRIAER DSQSSTISGE EREEQRIRLC  480
L*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0147s0490.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455555.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A2K2AR850.0A0A2K2AR85_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07270.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.13e-66MYB_related family protein