PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0147s0490.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 486aa    MW: 53918.8 Da    PI: 5.9823
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0147s0490.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding538.1e-1757101147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r rWT+eE++++++a k++G   W++I +++g ++t+ q++s+ qk+
  SapurV1A.0147s0490.1.p  57 RERWTEEEHKKFIEALKLYGRA-WRRIEEHVG-TKTAVQIRSHAQKF 101
                             78******************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.39E-1651105IPR009057Homeodomain-like
PROSITE profilePS5129421.73552106IPR017930Myb domain
TIGRFAMsTIGR015579.7E-1755104IPR006447Myb domain, plants
SMARTSM007171.6E-1356104IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-95797IPR009057Homeodomain-like
PfamPF002493.4E-1457100IPR001005SANT/Myb domain
CDDcd001671.89E-1059102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010600Biological Processregulation of auxin biosynthetic process
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MAIQMKDQCG GTQLNLDGIS LGDALNNTTG QQLKEQFSSW SDYSPKERKP YTITKQRERW  60
TEEEHKKFIE ALKLYGRAWR RIEEHVGTKT AVQIRSHAQK FFSKVVRESG GSSTSSVEPI  120
EIPPPRPKRK PTHPYPRKLA HSLEKELLIP EKSPRSSSLN FSISEQENQS PTSVLSAVGS  180
DALGSTDSDA PNRSLSPVSF GGGVQHADSS PDEDGSPSVA TASSVPDEQF PKVEKLDSYP  240
RENVSSEEHV VVEETSTRSL KLFGRTVFVT ESHKPSSPNM GTSKLSPLEA AEEKLVRPLT  300
LNNVDTQFLS GNGEPTWRPL SHGSHGSLCF MQFQKENSSP AQNDPATLMP WWTSYGATSF  360
PHIPFHKQEP AMDNLDSKGD EVQDKEIPKE VSWTGSNSGP VSEGENVDKN MDAETESQFF  420
YKEKELSPIF ELNLGKKSAS SESKVINEKC SKGFVPYKKR IAERDSQSST ISGEEREEQR  480
IRLCL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00515DAPTransfer from AT5G17300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0147s0490.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024455555.10.0protein REVEILLE 1 isoform X2
TrEMBLA0A2K2AR850.0A0A2K2AR85_POPTR; Uncharacterized protein
STRINGPOPTR_0004s07270.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29563372
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17300.12e-66MYB_related family protein