PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0147s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 659aa    MW: 72369.4 Da    PI: 6.5185
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0147s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS347.32.5e-1062846582374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             +++++e+A a+ +g++   +++L+r+s  ++p g++ qRl  y++ AL++rl++ +++++    ++      s+e++ a++l++e+s
  SapurV1A.0147s0170.1.p 284 KHTVIEAASAIFEGKTDVYTEILTRVSLVSNPGGNSEQRLMGYMLTALKSRLNSAGNTCA----MEL----YSKEHVDATQLLYELS 362
                             6899**************************************************443333....222....36889999******** PP

                    GRAS  89 PilkfshltaNqaIleavege........ervHiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesgskeeleetgerLa 166
                             P++k+++++aN aI +a+ ++        +  H++Dfdi++G+Q+++Ll aL+  ++++p+ ++iT+v+s ++g +e+l+ +ge L+
  SapurV1A.0147s0170.1.p 363 PCFKLGFMAANLAIIDAAREHkqeanassNGFHVVDFDIGHGGQYMNLLLALSgLQNSKPAIVKITAVASDSNGGEERLRPVGEMLS 449
                             *****************988765555444456*********************66668888*********9*99************* PP

                    GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnses 252
                             ++A+++g+++ f+v v+ +l++l+ e+L ++++E+laVn++++l+r++desvs+++  rde+L+ vk+l P+vv+vveqe+++n+++
  SapurV1A.0147s0170.1.p 450 QLARRVGLNLGFKV-VSCKLNELTRESLGCEQEEVLAVNFAFNLYRMPDESVSSTEnLRDELLRRVKGLAPRVVTVVEQEMNTNTAP 535
                             *************9.7999********************************9887669***************************** PP

                    GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                             F++r+ e+++yy alfds+e+++ r+s+er+kvE+  lgr+ivn vaceg++r+er+e ++kWr+rl++aGF+  pls+++a+ +k+
  SapurV1A.0147s0170.1.p 536 FMARVNESCSYYGALFDSIESTVERDSSERAKVEEG-LGRRIVNSVACEGRDRVERCEVFGKWRARLGMAGFELKPLSQNIAELMKT 621
                             ************************************.************************************************** PP

                    GRAS 340 llrkvk..sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              l+  +  + g++v+ee+g +++gW +++L+++SaWr
  SapurV1A.0147s0170.1.p 622 RLNLANrvNPGFTVKEENGGVCFGWTGKTLTVASAWR 658
                             99999887889*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.793257636IPR005202Transcription factor GRAS
PfamPF035148.6E-104284658IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 659 aa     Download sequence    Send to blast
MASGFLGGGG GGHDFYTNRS PIIPTMNLTN NHHNPSSLPP YRTNQMFLDQ NLSSPNYQQI  60
AQQRAIFPTT TSTTNLIGKR TLADFQAFQQ SPPQQNLLNQ AALNNLLLRS VKPRVNNNIF  120
QQNTSPISTL DFSVNNLSPE LPSLMSQRYG LPLLQQLRPQ QHQQQPMNLI SPIGVINNNR  180
SSSNSMMPYV NMLQNQNGGG NGIVMGQDRE KRMLNQLQEL EKQLLDDDDD NQDGDAVSGI  240
TNTNSEWSET IHNLITSTCN NPISPSPSSS SSSSSSTVTT PVSKHTVIEA ASAIFEGKTD  300
VYTEILTRVS LVSNPGGNSE QRLMGYMLTA LKSRLNSAGN TCAMELYSKE HVDATQLLYE  360
LSPCFKLGFM AANLAIIDAA REHKQEANAS SNGFHVVDFD IGHGGQYMNL LLALSGLQNS  420
KPAIVKITAV ASDSNGGEER LRPVGEMLSQ LARRVGLNLG FKVVSCKLNE LTRESLGCEQ  480
EEVLAVNFAF NLYRMPDESV SSTENLRDEL LRRVKGLAPR VVTVVEQEMN TNTAPFMARV  540
NESCSYYGAL FDSIESTVER DSSERAKVEE GLGRRIVNSV ACEGRDRVER CEVFGKWRAR  600
LGMAGFELKP LSQNIAELMK TRLNLANRVN PGFTVKEENG GVCFGWTGKT LTVASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-3530665826375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0147s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469220.0EF146922.1 Populus trichocarpa clone WS01223_P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305914.20.0scarecrow-like protein 8
SwissprotQ9FYR71e-179SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2K2ARG50.0A0A2K2ARG5_POPTR; GRAS family protein
STRINGPOPTR_0004s07700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-160SCARECROW-like 8