PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0146s0010.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TALE | ||||||||
Protein Properties | Length: 724aa MW: 78774.1 Da PI: 9.1847 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.1 | 1.6e-09 | 420 | 457 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + SapurV1A.0146s0010.3.p 420 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 457 554459******************************88 PP | |||||||
2 | BELL | 100.9 | 9.6e-33 | 296 | 366 | 2 | 72 |
BELL 2 rqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 rq+l+ kk kL+++l+e ++rY+qy++q+q+v+s Fe++ag g+ak+Yt+lAl++iS++Fr+Lk+ i++qi SapurV1A.0146s0010.3.p 296 RQDLRTKKGKLVKMLDEAEQRYRQYHHQMQVVVSLFEQAAGFGAAKSYTALALQTISKKFRSLKNTISSQI 366 7899******************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.7E-51 | 220 | 364 | IPR006563 | POX domain |
Pfam | PF07526 | 3.1E-42 | 225 | 363 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 398 | 461 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.3E-9 | 401 | 465 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.58E-12 | 401 | 462 | No hit | No description |
SuperFamily | SSF46689 | 5.99E-17 | 402 | 467 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-29 | 404 | 467 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.0E-18 | 418 | 457 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 724 aa Download sequence Send to blast |
MATYFHGSSE IQAAAAPSDG IQTLYLMNPN YLSSYAESTQ QQHQHQQQPP NMIFFNPSSS 60 TAASNNVLKT GKLPHAPPQN HHFVGIPLAA PSSNITSLTP DSNSRRPPLH GVVPSHVHYS 120 IWGSIDQNSF ATACESSAAS VVGSPQVGFR RPVAVSPGRQ GLSLSLSSQQ APTPYNRAIS 180 NNHHEIHALH SHVSVGSSGD EIRISGNSSS SVSAVSNGVS GLQNMVLGSK YLRAAQELLD 240 EAVNVGKDLV KRGLIEGSSK ERMEMTKEYS ITGDGTGGGG ETSAANRGAE LTTALRQDLR 300 TKKGKLVKML DEAEQRYRQY HHQMQVVVSL FEQAAGFGAA KSYTALALQT ISKKFRSLKN 360 TISSQIRATS KSLGEEDCVG AKVEGSRLRH VDHQLRQHND WRPQRGLPER AVSVLRAWLF 420 EHFLHPYPKD SDKHMLAKQT GLTRSQVSNW FINARVRLWK PMVEEMYVEE IKEQDSSEEN 480 ASKKDKIDSG SHYTAPGESS SLQMDQLKGV LHSKQLKKPS NQNASPVKFS YPTISMTMGA 540 PLQQQAGFTL IGPAEMEGIS RRSSTEPSSE MQNPPSSILS MDMDAKQGET SREINVDFGG 600 ERLIKDGYPL IASSGGFGAY PMGDLGRFNL EQLTPRFSAN GVSLTLGLPH CENLSLPGTE 660 QNYLSNQNIQ LGGKRRLKIG SGTEPGFSGI ITSQNSHSSS GFERIDIQNR TRFPAQLLPD 720 FVA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 1e-16 | 407 | 465 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 1e-16 | 407 | 465 | 5 | 63 | Homeobox protein Meis2 |
4xrs_A | 1e-16 | 407 | 464 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-16 | 407 | 464 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0146s0010.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU232352 | 0.0 | CU232352.1 Populus EST from mild drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024464286.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464287.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464288.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464289.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464290.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
Refseq | XP_024464291.1 | 0.0 | BEL1-like homeodomain protein 1 | ||||
TrEMBL | A0A2K1Z190 | 0.0 | A0A2K1Z190_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0009s02250.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G35940.3 | 1e-115 | BEL1-like homeodomain 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0146s0010.3.p |