PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0141s0260.6.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 782aa    MW: 87362.5 Da    PI: 6.7932
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0141s0260.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-094991347
                            SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +WT +E+e + +a +q G++ +++I r+++  +   q++++++ +
  SapurV1A.0141s0260.6.p 49 AWTHQEEESFFNALRQVGKN-FEKITRHVQ-SKNKDQVRHYYYRL 91
                            6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-123296IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.6E-64494IPR009057Homeodomain-like
PROSITE profilePS5129315.0014596IPR017884SANT domain
SMARTSM007171.0E-64694IPR001005SANT/Myb domain
PfamPF002495.6E-74991IPR001005SANT/Myb domain
CDDcd001672.42E-64992No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 782 aa     Download sequence    Send to blast
MEPQVSLSSE RHLHRNSSIQ VGDPGVTSST PDCVEPRQPE KRPTRQWAAW THQEEESFFN  60
ALRQVGKNFE KITRHVQSKN KDQVRHYYYR LVRRMNKLLG PRLYLDAKNS KDTNSAMLRW  120
WSLLAKYSCK ASKLHLKPRR FKIFVEALEN QLLKDRRKNV RKRSSQGENG SPTTPSIISN  180
QNRASGHDSR TLKLVLVDSQ NIQKLVVGKG SLKRNVNLGV IRNSIKGDLT AMKPARQRRK  240
PAAYKKWEKA AIAGVSLVAD AAEHLERTAT DKEVEHDEGQ KRLDSVENVL PHLLASLLDY  300
DESSAHNNMK LKLQLFPIDD GTRKALEMDK HNPHLELTLS TRKKISSVLE HLNRKWGNST  360
VASGELMLFP YIVNRENLAG CQRWTQDSLV NAADVYFSIG SPPVFRLRYG WFSNANFASV  420
TLQTPSTYIC LPDGGNEKGK AMDSASTNEP STSDQFLEDP CRECPTSMNS DHASTPNSAE  480
ESNEKNEFIT TRPINNLVKS FDTAANTYWH RTESDDRTST QQLEDVDGLR LSNVNALSAG  540
EWADSLTDVS IGDLLSELPH EADFNCAELP IVQSNQCLQQ IPFSCDSFDA AIAAHISRHQ  600
SKMGFFSSVT SHTSSIWDGE ETCDAFAFQR NHSLPKEVTT SSVASPRAGK QMDRTNSITS  660
SAFLEELPDF VGVMDYPTGE DHMCLSDSQV TNNQAKDFNG LTDIYWTDSL GLPDLDIPSS  720
KYHAEDLIST DSLGGLNHLI ASSLDAFQNC SFFGLNKKDS TSTVEARETT SFSDFKIGSG  780
I*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0141s0260.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024460385.10.0TSL-kinase interacting protein 1 isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A3N7F3Z70.0A0A3N7F3Z7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s12730.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.30.0TSL-kinase interacting protein 1