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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0141s0260.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB_related | ||||||||
Protein Properties | Length: 785aa MW: 87607.8 Da PI: 6.7932 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 49 | 91 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + +a +q G++ +++I r+++ + q++++++ + SapurV1A.0141s0260.1.p 49 AWTHQEEESFFNALRQVGKN-FEKITRHVQ-SKNKDQVRHYYYRL 91 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.48E-12 | 32 | 96 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.7E-6 | 44 | 94 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 15.001 | 45 | 96 | IPR017884 | SANT domain |
SMART | SM00717 | 1.0E-6 | 46 | 94 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-7 | 49 | 91 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.30E-6 | 49 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MEPQVSLSSE RHLHRNSSIQ VGDPGVTSST PDCVEPRQPE KRPTRQWAAW THQEEESFFN 60 ALRQVGKNFE KITRHVQSKN KDQVRHYYYR LVRRMNKLLG PRLYLDAKNS KDTNSAMLRW 120 WSLLAKYSCK ASKLHLKPRR FKIFVEALEN QLLKDRRKNV RKRSSQGENG SPTTPSIISN 180 QNRASGHDSR TLKLVLVDSQ NIQKLVVGKG SLKRNVNLGV IRNSIKGDLT AMKPARQRRK 240 PASSAAYKKW EKAAIAGVSL VADAAEHLER TATDKEVEHD EGQKRLDSVE NVLPHLLASL 300 LDYDESSAHN NMKLKLQLFP IDDGTRKALE MDKHNPHLEL TLSTRKKISS VLEHLNRKWG 360 NSTVASGELM LFPYIVNREN LAGCQRWTQD SLVNAADVYF SIGSPPVFRL RYGWFSNANF 420 ASVTLQTPST YICLPDGGNE KGKAMDSAST NEPSTSDQFL EDPCRECPTS MNSDHASTPN 480 SAEESNEKNE FITTRPINNL VKSFDTAANT YWHRTESDDR TSTQQLEDVD GLRLSNVNAL 540 SAGEWADSLT DVSIGDLLSE LPHEADFNCA ELPIVQSNQC LQQIPFSCDS FDAAIAAHIS 600 RHQSKMGFFS SVTSHTSSIW DGEETCDAFA FQRNHSLPKE VTTSSVASPR AGKQMDRTNS 660 ITSSAFLEEL PDFVGVMDYP TGEDHMCLSD SQVTNNQAKD FNGLTDIYWT DSLGLPDLDI 720 PSSKYHAEDL ISTDSLGGLN HLIASSLDAF QNCSFFGLNK KDSTSTVEAR ETTSFSDFKI 780 GSGI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0141s0260.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024460382.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_024460383.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Refseq | XP_024460384.1 | 0.0 | TSL-kinase interacting protein 1 isoform X1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | A0A2K2A181 | 0.0 | A0A2K2A181_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s12730.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9883 | 25 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.2 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0141s0260.1.p |