PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0141s0090.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 707aa    MW: 77845.3 Da    PI: 7.0637
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0141s0090.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98.2e-23124225199
                             EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                             f k+lt+sd+++ g +++p+ +ae +         ++ +  tl  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v
  SapurV1A.0141s0090.1.p 124 FAKTLTQSDANNGGGFSVPRYCAEMIfprldytADPPVQ--TLLAKDVHGETWKFRHIYRGTPRRHLLTTGWSPFVNHKKLIAGDSV 208
                             89*********************999****997555555..8999****************************************** PP

                             EEEE-SSSEE..EEEEE-S CS
                      B3  81 vFkldgrsefelvvkvfrk 99 
                             vF   + +++ l+v+v+r+
  SapurV1A.0141s0090.1.p 209 VFF--RAESGDLCVGVRRA 225
                             ***..4489999****996 PP
2Auxin_resp103.13.4e-34293376183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                             a++ a+++ +FevvY+Pra t+eF+vk++ v++a++++++ G Rfkmafetedss++++ +Gtv +v+++d++ Wp+S+Wr+L+
  SapurV1A.0141s0090.1.p 293 AVTLAANGLPFEVVYYPRANTPEFCVKASLVKTAMQIRWCSGIRFKMAFETEDSSRISWfMGTVCSVQAADSLWWPHSPWRLLQ 376
                             678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.8E-36113229IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-29117230IPR015300DNA-binding pseudobarrel domain
CDDcd100173.37E-20123224No hitNo description
PROSITE profilePS5086312.59124226IPR003340B3 DNA binding domain
SMARTSM010196.8E-21124226IPR003340B3 DNA binding domain
PfamPF023623.2E-20124225IPR003340B3 DNA binding domain
PfamPF065071.7E-30293376IPR010525Auxin response factor
PROSITE profilePS5174516.242619698IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 707 aa     Download sequence    Send to blast
MITFMEAKDK LKEEADKCLD SQLWHACAGS MVQMPAVNSK VFYFPQGHAE HACEPVDFRN  60
LPRVSHTLCR VSAIKFMADP ETDEVFAKIR LVPINSNEID LDDQEVSVNG GMEASQDNNK  120
PVSFAKTLTQ SDANNGGGFS VPRYCAEMIF PRLDYTADPP VQTLLAKDVH GETWKFRHIY  180
RGTPRRHLLT TGWSPFVNHK KLIAGDSVVF FRAESGDLCV GVRRAKRGSG GGPEPLWNPA  240
GGNSAVPNRG FGAFLREDEH KLMRSGSANG NGSKSNESLM GQGKVRAESV IQAVTLAANG  300
LPFEVVYYPR ANTPEFCVKA SLVKTAMQIR WCSGIRFKMA FETEDSSRIS WFMGTVCSVQ  360
AADSLWWPHS PWRLLQVTWD EPDLLQNVKR VSPWLVELAS NMAAIHFSPF SSPRKKLRLP  420
QHLDFPIDSQ FPMPIFSGGN LLGPSSSFDC LPPNTPAGMQ GARHAHYGLP LSDHLNKLQT  480
GLARAGFPPL LDHTASLTKA SNVQTIQKTS MCEEVSCELT MAHSPPTSKK AVDVKIPQLV  540
LFGQPILAEQ QISLSCTGNA ASPVLTGNSS SEGNLDKMAN FSDGSVSTLH RRGLPESSSC  600
EELQWNKDNH RKSEPSFETG HCKVFLDSED VGRTLDLSLL GSYEELYRKL ADMFGLMRDS  660
EKLSNVLYRD VNGITKHIGE ELFSDFFKTA RRLTIVTDSS SGNVGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A5e-77339732388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0141s0090.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT5854790.0KT585479.1 Populus tomentosa auxin response factor 16 (ARF16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381448.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A2K2A1C50.0A0A2K2A1C5_POPTR; Auxin response factor
STRINGPOPTR_0006s12930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]