PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0210.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 226aa    MW: 25774.2 Da    PI: 5.0565
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0210.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.62.2e-135799754
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  SapurV1A.0140s0210.3.p 57 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                            57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6985099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.16E-1353104No hitNo description
SMARTSM003531.8E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.6E-1756114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00599174224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQERKIQAEL TELESGKLKK  120
NQGGFDTYDH QELPVLLRSK KKKIDYQFYD FGGSKISPIE LLELRVNYMG ENTLLVSLTC  180
NKRTDTMVKL CEVFESLGLK IITANITTVS GRVLKTVFIE GNFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1455109963Transcription factor MYC2
5gnj_B4e-1455109963Transcription factor MYC2
5gnj_E4e-1455109963Transcription factor MYC2
5gnj_F4e-1455109963Transcription factor MYC2
5gnj_G4e-1455109963Transcription factor MYC2
5gnj_I4e-1455109963Transcription factor MYC2
5gnj_M4e-1455109963Transcription factor MYC2
5gnj_N4e-1455109963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0210.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325261.21e-154transcription factor bHLH35
SwissprotQ2HIV93e-84BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN671e-152B9IN67_POPTR; BHLH family protein
STRINGcassava4.1_015716m1e-134(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-77bHLH family protein