PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0140s0210.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 250aa    MW: 28360.3 Da    PI: 4.7325
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0140s0210.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.42.6e-135799754
                            HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                              Er+RR+++N++++ Lr ++P+ +      K++Ka+i + A++YI++L
  SapurV1A.0140s0210.2.p 57 VSERNRRKKLNERLFALRAVVPNiS------KMDKASIIKDAIDYIQEL 99
                            57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.6985099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-1751114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.56E-1353104No hitNo description
SMARTSM003531.8E-1556105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1756114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-115799IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.94E-6171240No hitNo description
CDDcd048731.76E-4174237No hitNo description
PROSITE profilePS516718.711175249IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER  60
NRRKKLNERL FALRAVVPNI SKMDKASIIK DAIDYIQELH DQERKIQAEL TELESGKLKK  120
NQGGFDTYDH QELPVLLRSK KKKIDYQFYD FGGSKISPIE LLELRVNYMG ENTLLVSLTC  180
NKRTDTMVKL CEVFESLGLK IITANITTVS GRVLKTVFIE ADEEEKDQLK LRIEAAIAAL  240
NDPISPMSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-1455109963Transcription factor MYC2
5gnj_B5e-1455109963Transcription factor MYC2
5gnj_E5e-1455109963Transcription factor MYC2
5gnj_F5e-1455109963Transcription factor MYC2
5gnj_G5e-1455109963Transcription factor MYC2
5gnj_I5e-1455109963Transcription factor MYC2
5gnj_M5e-1455109963Transcription factor MYC2
5gnj_N5e-1455109963Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0140s0210.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2271634e-57CU227163.1 Populus EST from severe drought-stressed leaves.
GenBankCU2286164e-57CU228616.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325261.21e-173transcription factor bHLH35
SwissprotQ2HIV94e-94BH035_ARATH; Transcription factor bHLH35
TrEMBLB9IN671e-172B9IN67_POPTR; BHLH family protein
STRINGXP_008223870.11e-139(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.14e-87bHLH family protein