PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0140s0210.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 264aa MW: 30108.3 Da PI: 5.0117 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.3 | 2.5e-12 | 57 | 113 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.as........kapskKlsKaeiLekAveYIksL 54 Er+RR+++N++++ Lr ++P+ + + ++Ka+i + A++YI++L SapurV1A.0140s0210.1.p 57 VSERNRRKKLNERLFALRAVVPNiSKvmtvkldkYHFTRQMDKASIIKDAIDYIQEL 113 57*********************655*******6556666***************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-15 | 42 | 127 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.84 | 50 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.26E-11 | 53 | 118 | No hit | No description |
SMART | SM00353 | 5.1E-14 | 56 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.9E-15 | 56 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.7E-10 | 57 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 8.85E-6 | 185 | 254 | No hit | No description |
CDD | cd04873 | 2.17E-4 | 188 | 251 | No hit | No description |
PROSITE profile | PS51671 | 8.711 | 189 | 263 | IPR002912 | ACT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEPIENIGEE YQNYWETKMF LQNEELDSWA IDEAFSGYYD SSSPDGAASS AASKNIVSER 60 NRRKKLNERL FALRAVVPNI SKVMTVKLDK YHFTRQMDKA SIIKDAIDYI QELHDQERKI 120 QAELTELESG KLKKNQGGFD TYDHQELPVL LRSKKKKIDY QFYDFGGSKI SPIELLELRV 180 NYMGENTLLV SLTCNKRTDT MVKLCEVFES LGLKIITANI TTVSGRVLKT VFIEADEEEK 240 DQLKLRIEAA IAALNDPISP MSM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0140s0210.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU227163 | 4e-57 | CU227163.1 Populus EST from severe drought-stressed leaves. | |||
GenBank | CU228616 | 4e-57 | CU228616.1 Populus EST from severe drought-stressed leaves. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325261.2 | 1e-170 | transcription factor bHLH35 | ||||
Swissprot | Q2HIV9 | 3e-90 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | B9IN67 | 1e-168 | B9IN67_POPTR; BHLH family protein | ||||
STRING | XP_008223870.1 | 1e-135 | (Prunus mume) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 3e-83 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0140s0210.1.p |