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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0138s0100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 246aa MW: 26736.6 Da PI: 6.3711 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 20.9 | 6.6e-07 | 153 | 179 | 4 | 30 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 4 ahnerErrRRdriNsafeeLrellPka 30 +h+ +Er RRd+i +++ L++l+P + SapurV1A.0138s0100.3.p 153 SHSLAERARRDKISERMKMLQDLVPGC 179 8************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 1.00E-4 | 147 | 188 | No hit | No description |
PROSITE profile | PS50888 | 9.356 | 149 | 206 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-8 | 149 | 194 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.6E-8 | 152 | 180 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.7E-4 | 153 | 179 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDPPLINENS FSAANPSSYS LTEIWPFPPS SSTALGLRVA NLADRDGSLD ESNVTEQSGG 60 NGNGNRKGID LSSEEDDSSK TVSTTTSAHD LNDLSGKRRK ISGSRNENSE SRAEIEASSA 120 ANNKPAEPSS KPSEPPMQDY IHVRARRGQA TDSHSLAERA RRDKISERMK MLQDLVPGCI 180 KFLSMKLEAV NSRMSMSPAI ERLHPKDPFD ATGMIFGPQP TKDYVQGPQS EWLHMQVGGS 240 FKRAM* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0138s0100.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024438461.1 | 1e-157 | transcription factor bHLH79 isoform X2 | ||||
Swissprot | Q9LV17 | 1e-56 | BH079_ARATH; Transcription factor bHLH79 | ||||
TrEMBL | A0A2K1YA88 | 1e-156 | A0A2K1YA88_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0012s07470.1 | 1e-152 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62610.1 | 2e-45 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0138s0100.3.p |
Publications ? help Back to Top | |||
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