PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0138s0100.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 269aa MW: 29288.6 Da PI: 5.9773

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0138s0100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.1	7.4e-09	153	199	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksL 54 +h+ +Er RRd+i +++ L++l+P + K Ka L + ++YI+sL SapurV1A.0138s0100.1.p 153 SHSLAERARRDKISERMKMLQDLVPGC-----IKvIGKALALDEIINYIQSL 199 8***********************9.....455*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.94E-7	147	204	No hit	No description
SuperFamily	SSF47459	6.15E-15	147	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.4E-16	149	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.862	149	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-6	153	199	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-6	155	205	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MDPPLINENS FSAANPSSYS LTEIWPFPPS SSTALGLRVA NLADRDGSLD ESNVTEQSGG 60 NGNGNRKGID LSSEEDDSSK TVSTTTSAHD LNDLSGKRRK ISGSRNENSE SRAEIEASSA 120 ANNKPAEPSS KPSEPPMQDY IHVRARRGQA TDSHSLAERA RRDKISERMK MLQDLVPGCI 180 KVIGKALALD EIINYIQSLH CQVEFLSMKL EAVNSRMSMS PAIERLHPKD PFDATGMIFG 240 PQPTKDYVQG PQSEWLHMQV GGSFKRAM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0138s0100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318005.1	1e-176	transcription factor bHLH79 isoform X1
Swissprot	Q9LV17	4e-76	BH079_ARATH; Transcription factor bHLH79
TrEMBL	B9I330	1e-174	B9I330_POPTR; Uncharacterized protein
STRING	POPTR_0012s07470.1	1e-175	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	1e-64	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0138s0100.1.p

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]