PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0134s0420.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 610aa MW: 68550.4 Da PI: 4.6829 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170.1 | 7e-53 | 17 | 143 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 ppGfrFhPtdeelvv+yLk+k+ +k+l+l ++++evd+yk++P++Lp + +k+++++w+fFs+rd+ky++g r+nrat++gyWkat SapurV1A.0134s0420.1.p 17 PPGFRFHPTDEELVVYYLKRKICKKRLKL-NIVREVDVYKWDPEELPgQsILKTGDRQWFFFSPRDRKYPNGARSNRATRQGYWKAT 102 8****************************.89**************96446788999****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+ v++ ++++vglkktLvfy+grap+g +tdWvmhey++ SapurV1A.0134s0420.1.p 103 GKDRIVVC-NSRNVGLKKTLVFYRGRAPNGDRTDWVMHEYTM 143 ********.999****************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-60 | 9 | 166 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.462 | 16 | 166 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-28 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070301 | Biological Process | cellular response to hydrogen peroxide | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005789 | Cellular Component | endoplasmic reticulum membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MKVTTDSFLG ADDMAWPPGF RFHPTDEELV VYYLKRKICK KRLKLNIVRE VDVYKWDPEE 60 LPGQSILKTG DRQWFFFSPR DRKYPNGARS NRATRQGYWK ATGKDRIVVC NSRNVGLKKT 120 LVFYRGRAPN GDRTDWVMHE YTMDEEELKR CPNVQDYYAL YKVYKKSGAG PKNGEQYGAP 180 FKEEDWVDDE FPRVNGLVTP EIPVKQHIEA TLVDNFKLSA PLELPLNDFE EIIKQIGGEH 240 AFNGLQNNDF SCLQPQVNGE EEAQSTLVDP CFREFVCEPV GELTTSDQHC NKHTNFNFDK 300 SDTSTLRLHE APEVTSATNY EQAPQLNEGD FLEINDLIDP EPYLSNAEQP VENLQFDDFD 360 GLSEFEQYHD AAMFLRDLGP VDQEAVSHSF MHPYGCDMVN QVGYQSQPDS IINAVDYQLQ 420 QSNLVASQVD CDLQPQFFDA EQMNNHLWVH GQRSNMSAAS ESHNGIFFQS PPGDVCESSN 480 NSTIANENQG VKEGDAANGW LSSALWDFVE SIPTTPASAS ENPLVNKAFE RMSSFSRIRM 540 NVKSINVEAA SRIRMNVSSI NVAAANGAAS VRSAGRTKGF VLLSIVVVLC AILWVFLGSG 600 RLSGRSISS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-49 | 13 | 143 | 12 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 34 | 43 | KRKICKKRLK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00179 | DAP | Transfer from AT1G34190 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0134s0420.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002302150.1 | 0.0 | NAC domain-containing protein 17 isoform X2 | ||||
TrEMBL | B9GT49 | 0.0 | B9GT49_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s06210.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-144 | NAC domain containing protein 17 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0134s0420.1.p |