PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0410.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NF-YA
Protein Properties Length: 303aa    MW: 33756.8 Da    PI: 8.5996
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.77.9e-33143199158
               CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                             +ep+YVNaKQy++Il+RRq+Rak+e e+kl  k+rkpylheSRh hA+rR+Rg+gGrF
  SapurV1A.0133s0410.1.p 143 EEPVYVNAKQYHGILRRRQSRAKAELERKL-VKTRKPYLHESRHLHAMRRARGCGGRF 199
                             69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.2E-37141202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.924142202IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.8E-28144199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.3E-24145167IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.3E-24176199IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MQKTMDSIVT TNYPLSSPFK PWWCNKGHNS IFSNVLGEST KNSSLPESTD DGLGTKASKP  60
HGSGQVDGGT AADREMQLNA VSESDGKYGD HHHPQQAAAV MIPAMDVYLG PSTQLELVGH  120
SIVHSDYAGP NPARMVLPLE MAEEPVYVNA KQYHGILRRR QSRAKAELER KLVKTRKPYL  180
HESRHLHAMR RARGCGGRFL NTKKHDTTDD TAPDKHTSPD ETVSRNITIS SSSGQILSRF  240
SRNSDPSMSN SEVTECLRQM NPHEKYLSDG CTPQFPRYHL SEFLSLSEKM LGERDRNVNK  300
LW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-21143207266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002308961.31e-176nuclear transcription factor Y subunit A-10
TrEMBLA0A2K1ZX791e-175A0A2K1ZX79_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05210.11e-176(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2298744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.21e-34nuclear factor Y, subunit A7