PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0340.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 582aa    MW: 64989.2 Da    PI: 4.8937
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0340.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding262.1e-08521573247
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmg....kgRtlkqcksrwqky 47 
                              +WT +E+e l+++v+++ ++    Wk I ++      +gRt  ++k++w++ 
  SapurV1A.0133s0340.1.p 521 VSWTVQEEEMLKEGVQKFSSDgkfPWKDILEYGSsvflNGRTTIDLKDKWRNM 573
                             68******************************9999999************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.491515574IPR017877Myb-like domain
SuperFamilySSF466891.87E-11517575IPR009057Homeodomain-like
SMARTSM007177.1E-5519576IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-11519575IPR009057Homeodomain-like
PfamPF002499.3E-6520572IPR001005SANT/Myb domain
CDDcd116601.58E-15523575No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 582 aa     Download sequence    Send to blast
MDDPSSSATT LAWLWVIEYL ASFPEIEASI LHDLIEAAPK IPDHLGNNTK EMVALRCLEG  60
LFCRNNGITN DIPSKEPKVT FDLSERCEDV LQSILQEKPV SDLKRAGQER LKWDIHPFIT  120
HKRASMPKCA LEKVKDAILE GIHPYASLKE YSGLVDANDR CNIIPANFGD LGAPAVRIDG  180
SDSDGQINAP EENFIPLRGI EVEGDSCNSH SLHFKRARSG LASKNLAGDL EDQNCVDDGN  240
HLHPQAKRFK QDAVCDNQSL EHISTPPQQH MDGLEDSFER VIGDSENKDC HMGKKTSQGG  300
LEENRPVENG HDECVGMDRQ GQCLDPDNAF QHNQHEIAHN ANKMPQDISG DRLHPYSLVD  360
EIICAEARIS NTAPSVGTPK KIFVNENEDN SDHSGQLKPS NSLCHPDAAV RTNLISNGEK  420
VGEEVVRENS SGTGLDRNQH EVCADPNDSD ADQLCKEKDV FSESQRKDGQ RQKAVCFTNI  480
DEGETSDDEN DKSSTSNYFI RFRNIEKQQY PIMPQLRRKK VSWTVQEEEM LKEGVQKFSS  540
DGKFPWKDIL EYGSSVFLNG RTTIDLKDKW RNMCKVSPKS K*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0340.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826860.0AC182686.2 Populus trichocarpa clone Pop1-37M17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020332.10.0PREDICTED: uncharacterized protein LOC105122743 isoform X2
RefseqXP_011020333.10.0PREDICTED: uncharacterized protein LOC105122743 isoform X3
TrEMBLA0A2K1XB270.0A0A2K1XB27_POPTR; Uncharacterized protein
STRINGPOPTR_0006s05310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38722224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.29e-09MYB_related family protein