PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0133s0050.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 369aa    MW: 40570.9 Da    PI: 9.422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0133s0050.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.21.1e-11296341655
                             HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             +++Er RR ri +++ +L+el+P+     +k  + a++L +Av YIk+Lq
  SapurV1A.0133s0050.1.p 296 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDLAVVYIKDLQ 341
                             689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.589290340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-15293355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.04E-11294343No hitNo description
Gene3DG3DSA:4.10.280.101.3E-13295352IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-8296341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-12296346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MDSSSSHIYH QQNNQPSSGL LRFRSAPSSH LANFTDNGVD DDSVLNFQEL EDKSAARVRE  60
EAVNYSSFTR SYPGLPPHYP RQSSTAGSLA MDSSYGLIGS ITMGHQEQVG KVDSNLARQN  120
SSPAGLFGNL HVQNGYPTIK GVGNYSGLNG SNGEASPRLQ SQLSFSSRAP SSLGLLSQIS  180
EIGSESMEAG SPDSGKLTSV NVDSRFYRSH RFSYGGWNDS HLSENFSSTN REQENGNSFS  240
NAQNGELGNR TRVLSHHLSL PRTSVEMVSS EKFLHFQDSV PCKIRAKRGC ATHPRSIAER  300
VRRTRISERM RKLQELVPNM DKQTNTADML DLAVVYIKDL QKQYKTLSDN RATCKCLSKQ  360
KPGQNKIV*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0133s0050.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381041.10.0transcription factor bHLH130 isoform X1
SwissprotQ66GR31e-101BH130_ARATH; Transcription factor bHLH130
TrEMBLB9N6W00.0B9N6W0_POPTR; BHLH family protein
STRINGPOPTR_0006s05640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-103bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]