PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0129s0130.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 140aa    MW: 16213.6 Da    PI: 9.9491
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0129s0130.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.82.8e-281059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            rien + rqvtfskRr g++KK +ELSvLCdae+ +iifss+gklye++s
  SapurV1A.0129s0130.1.p 10 RIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCS 59
                            8***********************************************96 PP
2K-box48.73.2e-1777140769
                   K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                              + le++++e+ q+e+++++ke++ Lq + R + Ge+L+sL ++ L +Le+qLe s++k+R++K
  SapurV1A.0129s0130.1.p  77 MRvLESNDWEQIQKESKRIRKETDDLQLSVRCYRGENLSSLHYEGLAELEKQLECSVNKVRARK 140
                             45588999*******************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.132161IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-39160IPR002100Transcription factor, MADS-box
CDDcd002651.87E-37272No hitNo description
SuperFamilySSF554551.44E-30278IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.9E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1381140IPR002487Transcription factor, K-box
PROSITE profilePS5129710.32485140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    Send to blast
MGRGKIAITR IENRTARQVT FSKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCSE  60
SSSIPQIIRR YEISKGMRVL ESNDWEQIQK ESKRIRKETD DLQLSVRCYR GENLSSLHYE  120
GLAELEKQLE CSVNKVRARK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19171169MEF2C
5f28_B3e-19171169MEF2C
5f28_C3e-19171169MEF2C
5f28_D3e-19171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0129s0130.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318890.23e-95MADS-box protein FBP24 isoform X1
SwissprotQ9ATE51e-52FBP24_PETHY; MADS-box protein FBP24
TrEMBLB9I4N67e-94B9I4N6_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14770.12e-94(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.39e-50MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]