PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

M-type_MADS

Protein Properties

Length: 96aa MW: 10797.3 Da PI: 8.5128

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0129s0120.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.1	1.1e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g++KK +ELSvLCdae+ +iifss+gklye++s SapurV1A.0129s0120.1.p 10 RIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCS 59 8***********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	31.132	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.0E-39	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.7E-30	2	81	IPR002100	Transcription factor, MADS-box
CDD	cd00265	7.38E-39	2	65	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-29	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	9.3E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-29	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.2E-29	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MGRGKIAITR IENRTARQVT FSKRRGGLFK KTHELSVLCD AEIGLIIFSS NGKLYEFCSE 60 SSSSVKRVLS DEPEWSDFDR NVAGIHAPCF FHTEW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6bz1_A	8e-21	1	77	1	74	MEF2 CHIMERA
6bz1_B	8e-21	1	77	1	74	MEF2 CHIMERA
6bz1_C	8e-21	1	77	1	74	MEF2 CHIMERA
6bz1_D	8e-21	1	77	1	74	MEF2 CHIMERA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0129s0120.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002318890.2	3e-37	MADS-box protein FBP24 isoform X1
Refseq	XP_024437594.1	3e-37	MADS-box protein FBP24 isoform X2
Swissprot	Q9ATE5	5e-30	FBP24_PETHY; MADS-box protein FBP24
TrEMBL	A0A3N7FUJ2	6e-36	A0A3N7FUJ2_POPTR; Uncharacterized protein
TrEMBL	B9I4N6	7e-36	B9I4N6_POPTR; Uncharacterized protein
STRING	POPTR_0012s14770.1	2e-36	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF119	33	360

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03710.3	2e-27	MIKC_MADS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0129s0120.1.p

Publications ? help Back to Top
Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG In vivo imaging of MADS-box transcription factor interactions. J. Exp. Bot., 2006. 57(1): p. 33-42 [PMID:16291798]