PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0127s0240.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 371aa    MW: 41529.4 Da    PI: 6.179
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0127s0240.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding521.6e-161461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g W++eEde+l ++++++G g+W+++++  g+ R++k+c++rw +yl
  SapurV1A.0127s0240.1.p 14 KGLWSPEEDEKLFNYITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                            678*******************************************97 PP
2Myb_DNA-binding45.41.9e-1467110146
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             rg ++++E+ l++ +++ lG++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0127s0240.1.p  67 RGLFSQQEENLIISLHEVLGNR-WAQIAAQLP-GRTDNEIKNFWNS 110
                             7889******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.2E-25664IPR009057Homeodomain-like
PROSITE profilePS5129417.883961IPR017930Myb domain
SuperFamilySSF466891.83E-2812108IPR009057Homeodomain-like
SMARTSM007174.1E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-141461IPR001005SANT/Myb domain
CDDcd001676.40E-111761No hitNo description
PROSITE profilePS5129425.07762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565116IPR009057Homeodomain-like
SMARTSM007172.9E-1466114IPR001005SANT/Myb domain
PfamPF002491.8E-1367111IPR001005SANT/Myb domain
CDDcd001672.74E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGRHSCCLKQ KLRKGLWSPE EDEKLFNYIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGLF SQQEENLIIS LHEVLGNRWA QIAAQLPGRT DNEIKNFWNS CLKKKLMKQG  120
IDPATHKPLS QEEVKEEKTC TEKASLQIPR SNGLPILSNL SAQEPAFITN DTAYNSSGLT  180
EASREQFISK EAYDPIAYFE FPPSIDPVGY NPNISSVYHP TVRPLDQNQF ETSPNFVFTS  240
MPSLTSFDRG GMRGAELSDN SASRLSSMFL NEAKESSSNS SNISNYAGYQ MSSMVENAAG  300
FSSWDSDDKL ESVFQYHQVN GIKTGELKPT PWQEAGQLQT HQNSVDFSSY PLTSLSEDLT  360
GANFDGFHQI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0127s0240.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707850.0AB970785.1 Populus tremula x Populus tremuloides PtxtMYB148 mRNA for MYB transcriptional factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318064.10.0transcription factor MYB7
TrEMBLB9I3D30.0B9I3D3_POPTR; MYB family protein
STRINGPOPTR_0012s08600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58313353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.18e-83myb domain protein 86