PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0118s0500.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 488aa    MW: 55321.4 Da    PI: 4.5735
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0118s0500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS130.51.8e-401239129374
                    GRAS 129 lqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlvakrledleleeLrvkp...gEalaVnlvlqlh 211
                             ++ L +  ++  s+++T + ++ s++++ l+e+   L+  A++lg+ +f+ n + a++++ +  ++L++k+   +Ea++V++ ++lh
  SapurV1A.0118s0500.1.p   1 MRDLVKHMGSGLSFQVTNIRPKLSNNEDYLHEMDLVLSAEAKTLGLtDFKLNHVFANTVAGIVESTLNLKRtseDEAIVVKWEFELH 87 
                             56677777788899*******9999********************946******9*****99999999888888************* PP

                    GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                             +l   +++le+    vL+ +k+l+P+++v+veqea+hn+++ l+r+++++ yys++fds+e+++  + e +i+ E   ++r+i+nvv
  SapurV1A.0118s0500.1.p  88 KLILLPGALEK----VLSKLKDLRPEIMVIVEQEANHNNPDILDRVARSFPYYSSVFDSIEKEF--NFESKISWEID-FRRQITNVV 167
                             ***88999998....************************************************8..45777888888.9******** PP

                    GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                             a e  e  erhet + Wre+l++ GF+pv+  +  + +  +l +  +   y +  e+g+ vl   + pLv++SaW+
  SapurV1A.0118s0500.1.p 168 AREDIENAERHETQAWWREQLHHLGFHPVR--QWFNHTRGCLFSDLA--QYIIGGENGCPVLRRYNVPLVFASAWK 239
                             ***************************987..555667789999998..5*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035146.3E-381239IPR005202Transcription factor GRAS
PROSITE profilePS5098516.7981223IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MRDLVKHMGS GLSFQVTNIR PKLSNNEDYL HEMDLVLSAE AKTLGLTDFK LNHVFANTVA  60
GIVESTLNLK RTSEDEAIVV KWEFELHKLI LLPGALEKVL SKLKDLRPEI MVIVEQEANH  120
NNPDILDRVA RSFPYYSSVF DSIEKEFNFE SKISWEIDFR RQITNVVARE DIENAERHET  180
QAWWREQLHH LGFHPVRQWF NHTRGCLFSD LAQYIIGGEN GCPVLRRYNV PLVFASAWKP  240
ELVHSDGGSD NKENAGNPES ISSCLELNDL SRIQNECEEE GDPTIMREGN MWSPECPSIN  300
EIAASSEIFD ILESVCHVYK LPLALTWISD GTETTKNSDG KNLLHVEDSA CYVNDLGATE  360
FVEIYAGFDL EEGQGVAGKA LLSNIYFVPD VSDLYPADYP FVYEAWKFGL HDAVAIKLKN  420
TYRSSVDYIL EFFRPSKMRE ISEKQLLVNT MLSTLQKNRR NSWIVCGIDL NVVDAVSEVT  480
AAEMVSD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0118s0500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011015945.10.0PREDICTED: DELLA protein GAIP-B-like
TrEMBLA0A2K1ZTT21e-143A0A2K1ZTT2_POPTR; Uncharacterized protein
STRINGPOPTR_0007s01550.11e-143(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1790237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.11e-41GRAS family protein