PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0117s0370.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 324aa    MW: 35541.6 Da    PI: 7.0485
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0117s0370.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.4e-074390354
                            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                              +  rE+ RRdr+ + f eL   l ++     ++++Ka+iL  +++ +k+L
  SapurV1A.0117s0370.1.p 43 IQKADREKLRRDRLTEHFVELGNTLDPD----RPRNDKATILADTIQLLKDL 90
                            56789********************997....799**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1240109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.8394090IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-54194No hitNo description
Gene3DG3DSA:4.10.280.106.6E-1041112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-54390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-54696IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDPFTAFNPP APHPDQRHVP PTRPSPSPSP NPNPKSSVSA RKIQKADREK LRRDRLTEHF  60
VELGNTLDPD RPRNDKATIL ADTIQLLKDL TSQVDKLKAE YATLSEESLE LTQEKNDLRE  120
EKASLKLDID NLNIQCQQRL RAPYPWPAMN HSVMMVPPSY PFPMPVPMPP GAISLHSPIQ  180
PCPFFGNQNP AIIHNSCSTY VPCMAPNNLV DQQSAQHVSS LSQPASRSHV SGKQDPKNKS  240
SGECKIEKSE GSDDVSTDLE LKTPGSTADQ DLSPGQRKSK KSQRKESSVT EWSSSSRCSS  300
SPSVQDSSHN SAVGGTKHDD LDS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0117s0370.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2309104e-73CU230910.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006384545.11e-164transcription factor bHLH121
RefseqXP_024454652.11e-164transcription factor bHLH121
RefseqXP_024454653.11e-164transcription factor bHLH121
SwissprotQ9LT234e-87BH121_ARATH; Transcription factor bHLH121
TrEMBLB9H1511e-163B9H151_POPTR; Uncharacterized protein
STRINGPOPTR_0004s17540.31e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22823376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.13e-74bHLH family protein
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]