PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0110s0180.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 217aa MW: 23578 Da PI: 9.352 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 28 | 4e-09 | 65 | 109 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++Er RR ri ++ L+el+P++ K + a++L + v+Y+k L SapurV1A.0110s0180.5.p 65 HSIAERLRRVRITERVKALQELVPTC-----NKTDRAAMLDEIVDYVKFL 109 99***********************8.....6****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.36E-10 | 58 | 114 | No hit | No description |
SuperFamily | SSF47459 | 1.07E-14 | 58 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.783 | 60 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-15 | 62 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.7E-7 | 65 | 109 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.9E-10 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MTSLFPTFGH LQIHSSIRPT PPPPRPPQIH QINSHQNPGA VSAVPQPPGI RPRVRARRGQ 60 ATDPHSIAER LRRVRITERV KALQELVPTC NKTDRAAMLD EIVDYVKFLK LQVKVLNMSR 120 LGAAGAVAQL VADVPLLSVQ GEGNEGGATQ ESWENWSNDG TEQEVAKLME EDVGAAMQFL 180 QSKALCIMPI SLASAIFRAR SPNALTLINT ESNTPS* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for ovule fertilization. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0110s0180.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237587 | 1e-100 | AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439434.1 | 1e-138 | transcription factor UNE12 isoform X2 | ||||
Swissprot | O22768 | 1e-75 | UNE12_ARATH; Transcription factor UNE12 | ||||
TrEMBL | A0A2I4KKU0 | 1e-137 | A0A2I4KKU0_POPTR; BHLH family protein | ||||
STRING | POPTR_0005s05500.1 | 1e-133 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G02590.3 | 2e-71 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0110s0180.5.p |
Publications ? help Back to Top | |||
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