PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0110s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 612aa    MW: 69432 Da    PI: 6.3267
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0110s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.6e-14100156263
                trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 
                             W+++evlaL+++r++me+ + +       We+vs+k++e gf+rs+++Cke +e+ ++++  
  SapurV1A.0110s0020.1.p 100 WSNDEVLALLRIRSSMETLFPEF-----TWEHVSRKLAEVGFKRSAEKCKENFEEESRYFNS 156
                             ********************998.....9*****************************9975 PP
2trihelix97.41.2e-30464550186
                trihelix   1 rWtkqevlaLiearr..emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                             rW+++evlaLi++r   +++++ ++g++k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+ +kkr s +s+tcpyf+ql
  SapurV1A.0110s0020.1.p 464 RWPRDEVLALINLRCslYTNNEDKDGSAKAPLWERISQGMLESGYRRSAKRCKEKWENINKYFRKTKDVNKKR-SMDSRTCPYFHQL 549
                             8*************844666777789**********************************************8.88899*******9 PP

                trihelix  86 e 86 
                              
  SapurV1A.0110s0020.1.p 550 S 550
                             6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-898160No hitNo description
PROSITE profilePS500906.05198151IPR017877Myb-like domain
PfamPF138377.1E-20463552No hitNo description
CDDcd122031.42E-23463530No hitNo description
PROSITE profilePS500906.655464523IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MFEGVPEQFH QFMASRTAAS LPPPFPLLQG SSNSANYPSF YPYSTTSSQQ VPVLQPSFLH  60
PLHQGSPASK DGEKQENNLV AMNLDQFERG RSISELVNPW SNDEVLALLR IRSSMETLFP  120
EFTWEHVSRK LAEVGFKRSA EKCKENFEEE SRYFNSNINY HKNYRTSFGE LEEIYHGDQN  180
PRQEFTAGER NKKIDKPGTE DEEQDKMRQN LEEETRIDQT VGNQTDDQDN NGKLALVEKS  240
KSNKRKREEK FEIFKRLCED IVNTMMAQQE EMHNKLLEDM VKRDEEKVAK EEARKKLEMD  300
RIDKELEIRA HEQALASDRQ ATLIKFLKKF TSSDPSAEIF GEKTAPDLVI PNSLNASSSS  360
SLVRAQNPNP VSNESQAKAP TPSILDKTNT SWTENQEPRN PISTLAPNIP QVPTTSNTLA  420
VLAPQNPNSL NSQSSSSGPP NALLIYKKVQ AKSTSNDKDD IGKRWPRDEV LALINLRCSL  480
YTNNEDKDGS AKAPLWERIS QGMLESGYRR SAKRCKEKWE NINKYFRKTK DVNKKRSMDS  540
RTCPYFHQLS ALYNQGTLVA PDNRSTSPEN QSNLSETRHS SSSQNGTSNS TVHVGDGERN  600
MAQAPPFDFE F*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0110s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319635.10.0trihelix transcription factor GTL2
TrEMBLB9I5E10.0B9I5E1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s03670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50433355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.12e-88Trihelix family protein