PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0108s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 270aa    MW: 29403 Da    PI: 8.9657
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0108s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.5e-12556147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                            +++WT eE+e l  +v+++G+g Wk I r          R+  ++k++w++ 
  SapurV1A.0108s0150.1.p  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQRDPEfnphlCSRSNIDLKDKWRNM 56
                            79****************************999999989***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.943161IPR017930Myb domain
SuperFamilySSF466892.51E-16259IPR009057Homeodomain-like
SMARTSM007171.9E-8459IPR001005SANT/Myb domain
PfamPF002496.5E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-14556IPR009057Homeodomain-like
CDDcd116601.58E-20657No hitNo description
SuperFamilySSF467854.3E-16110193IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-15110184IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005269.3E-20111176IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150424.062113181IPR005818Linker histone H1/H5, domain H15
PfamPF005389.2E-11115179IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQRDPEFNPH LCSRSNIDLK DKWRNMTVSA  60
GSQSVKDKSR TTKVKSNSDA AAAAPLPNPQ TSAAAAADVA IDDYSEAAAD SKTAPKYNAM  120
IFEAISAYNE PNGADTSSII SYIEKRQELP QNFRRQLSSK LRRLVAQEKL EKVQNSYKIK  180
KVSSFGTKTP TPKKEVRPKP VPEAGDTVEG AANDAAYSVA EAENKSFVAT EAVKESERVS  240
KMAEDADSLL QLANEILEKC LRGEIVIMG*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0108s0150.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003347.11e-169PREDICTED: telomere repeat-binding factor 4-like
TrEMBLB9HDX41e-167B9HDX4_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14940.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.28e-72MYB_related family protein