PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0107s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 467aa    MW: 51823.7 Da    PI: 8.1791
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0107s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix51.52.6e-161896183
                trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83
                            +Wt++e  aLi+a+r+++ +++rg l+ ++We+v++++ +    +s+ qC++k+e+l+kry+++k+   k   +  s++ +f 
  SapurV1A.0107s0160.1.p 18 CWTQEESIALIKAYRDKWYSVNRGHLRVADWEAVAAAVPS----KSSLQCRHKIEKLRKRYRAEKQKCLKYPGRFFSSWDLFP 96
                            8************************************985....79******************9987666555566666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-1417101No hitNo description
Gene3DG3DSA:1.10.10.604.5E-41966IPR009057Homeodomain-like
CDDcd001673.03E-51970No hitNo description
PROSITE profilePS500906.9111971IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSTTPSSDIT TKRVPPPCWT QEESIALIKA YRDKWYSVNR GHLRVADWEA VAAAVPSKSS  60
LQCRHKIEKL RKRYRAEKQK CLKYPGRFFS SWDLFPLLDS IEIGSLGSKV EQEIDEGNDA  120
GDGLCVKTLG DRYMLIAQKN RKINGDLDPD EVFDLDPDFA LRARKYSKVD GDFSVSKDSG  180
SGFGVNSVAF RPNDYVGVNG KIKAKVGFNC DHGGEVGYKM EKTQGDRSFM PQGVRLPDYA  240
MMADHHGSYN NSDFSKGVDV YEGFPLKSIG DRNLPFQGLN PKNYKKIDTK PPPVFCDDDH  300
VEIDYRIDKR DSFGKKVNDG WSSSPPGYIP NNCGNIGGKS RSDSLSRALK GSVNGDGVKR  360
EADSVALLVS AIEQATESLV KVEMMKMDMA MEIEKMRMEM GLKHNQMILE SQQQIVDALA  420
KAMLEKTKRK KVEVLSSNSN RNGYTQVAAV DCESIGKGSV VKESET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0107s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011031982.10.0PREDICTED: uncharacterized protein LOC105130945
TrEMBLA0A3N7EUY10.0A0A3N7EUY1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s08210.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137971421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.13e-32Trihelix family protein