 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0106s0450.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
| Family |
SRS |
| Protein Properties |
Length: 355aa MW: 36941.7 Da PI: 8.1899 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0106s0450.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 211.6 | 1.9e-65 | 140 | 299 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsst 89
s t++C+dCGnqakkdC+h+RCRtCCksrgfdC+thvkstWv+aa+rrerq a+a a ++ +++ sk++r +++++++s+t
SapurV1A.0106s0450.1.p 140 SATTTCEDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVAAARRRERQLI-ATAGGGAGSTGSTSGSKKPRLI-NSQTTTTSHT 224
57899********************************************9655.4555666777788999999975.788899999* PP
DUF702 90 klssaeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
++s+++++++ +tss +P +v ++avfrcvrv++v+dge+e+aYq++v+igGhvfkG+Lyd+G+e+
SapurV1A.0106s0450.1.p 225 STSNTTPPRSYDTSSshqdagfkerFPGQVTAPAVFRCVRVTAVEDGEDEYAYQAVVKIGGHVFKGFLYDHGIET 299
************9999********************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 355 aa
Download sequence Send
to blast |
MGMLGLRDVF VVAPAASFNH HHHQHHEQIN LSTADPINAS NATALGVGVG VGVIPLLPSA 60
PCLTPLNMDD QDLLNNGRNK ISGIHQFWQN QGSQYIKKAS NTTPSILDHH NMSSTANLLL 120
QSGNGGGNGS GNLGGNSSSS ATTTCEDCGN QAKKDCSHRR CRTCCKSRGF DCSTHVKSTW 180
VAAARRRERQ LIATAGGGAG STGSTSGSKK PRLINSQTTT TSHTSTSNTT PPRSYDTSSS 240
HQDAGFKERF PGQVTAPAVF RCVRVTAVED GEDEYAYQAV VKIGGHVFKG FLYDHGIETR 300
DGFPNISELH LGGAGDGTGR HGASSSSPIL DPSAVYGASA GGLLAGSAFG NPIN*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-74 | Lateral root primordium (LRP) protein-related |
