PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0105s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 300aa    MW: 32147.2 Da    PI: 9.2478
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0105s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-0999124227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             k elCr +   G+C+y ++C+FaHg+
  SapurV1A.0105s0250.1.p  99 KKELCRAWEDLGHCRYAASCQFAHGK 124
                             78**********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.14E-797129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-1198128IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-498124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.85998125IPR000571Zinc finger, CCCH-type
PfamPF006426.5E-699124IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEQLNKSVNK DSMIVTYLRG GAGSPIKSPA SDRFSSNYQR SSSSNRSGSS RSPLSPLESV  60
NAPMMAADEV LVMDGVLVSS VVGSGSSSNS CSSGKSVHKK ELCRAWEDLG HCRYAASCQF  120
AHGKEELHPT HFPIKNKAVV HSCKSYATSP RSSPHVPKCR ILPPAMTKAA VSASHTALSK  180
ITGYTSTSPI TISSEKFSKN STTPISTPDH FLRTYISTRP EPCNKSPASS IKSEDSKMVF  240
TATISSDNWS PQDDGIEIAL PRQTGKCISR EEGDAYNHNV LYGPATKKRL PVFSELCPG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0105s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010999374.11e-169PREDICTED: uncharacterized protein LOC105107224
RefseqXP_010999375.11e-169PREDICTED: uncharacterized protein LOC105107224
RefseqXP_010999376.11e-169PREDICTED: uncharacterized protein LOC105107224
RefseqXP_010999377.11e-169PREDICTED: uncharacterized protein LOC105107224
TrEMBLB9H7E01e-163B9H7E0_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19930.11e-164(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117801416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.12e-06C3H family protein