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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
SapurV1A.0104s0440.1.p |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family |
C2H2 |
| Protein Properties |
Length: 334aa MW: 36867.1 Da PI: 6.0341 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| SapurV1A.0104s0440.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.9 | 0.00017 | 269 | 291 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C+k+F + L H r+H
SapurV1A.0104s0440.1.p 269 FECPYCSKVFGSGQALGGHKRSH 291
89**************9999999 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Pfam | PF13912 | 5.2E-7 | 3 | 28 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 8.787 | 4 | 31 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.16 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 6 | 26 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.40.10 | 2.2E-4 | 212 | 280 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| PROSITE profile | PS50157 | 9.058 | 226 | 256 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.5E-7 | 226 | 291 | No hit | No description |
| SMART | SM00355 | 53 | 226 | 246 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 0.013 | 226 | 246 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.284 | 269 | 291 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.024 | 269 | 291 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 5.0E-13 | 269 | 292 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 271 | 291 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MERHKCKLCI RTFPNGRALG GHMKAHLAAT RQQLGGLDRT ESFSSSYSSS SGEEEVKEEQ 60
EIVKNREMAE EKSLAYGLRE NPKKSFRLAD PEFSFAADTA GSVVVQDRES ETESRNPTRR 120
RSKRIRKSCG FGDNQKQDFD ANKAADLKNP SWVESSSPAE PEPVSSVSDT SPEEDVARCL 180
MMLSRDVWMR NIEDDYEEQV GKDGEKSVEM LQEAEEIKVS KIRGKFRCEK CMKLFRSSKA 240
LSGHKRICSL NATEVRKFAG SADANDRIFE CPYCSKVFGS GQALGGHKRS HLIGSATSTS 300
GVAEASAKLE TSLIDLNLPA PVEDDEFSVV SDA*
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