PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0102s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 605aa    MW: 65795.2 Da    PI: 4.9045
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0102s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS451.84.5e-1382335961374
                    GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfse 86 
                             lv++Ll+cA+  ++++lela+al++r+  la+++  +m+++a+yf+eALa+r+++        ++p++ + ++   ++l     f+e
  SapurV1A.0102s0220.1.p 233 LVHTLLACAKETQEENLELADALVKRIGLLAASQTGAMRKVATYFAEALARRIYK--------ISPQDYRLDSsCLDTLE--MHFYE 309
                             689****************************************************........34444432221233332..34*** PP

                    GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelg 173
                             ++P+lkf+h+taNqaIlea++ ++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++g
  SapurV1A.0102s0220.1.p 310 TCPYLKFAHFTANQAILEAFADASRVHVIDFGLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALQQVGWKLAQLARTIG 396
                             *************************************************************************************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
                             v+f+f+ +va++l+dl+ e+L + p   Ea+aVn+v++lhrll++++ +++    vL  +k ++Pk+v+vveqea+hns+ Fl+rf+
  SapurV1A.0102s0220.1.p 397 VEFQFRGFVANSLADLDAEMLGLLPpeVEAVAVNSVFELHRLLARPGGIDK----VLGSIKAMRPKIVTVVEQEANHNSPVFLDRFT 479
                             ***********************998899**************99998888....******************************** PP

                    GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345
                             eal+yys+lfdsle +     +++ ++++ +lgr+i+nvvacega+r+erhe l++Wr rl++aGF pv+l+++a kqa++ll+ ++
  SapurV1A.0102s0220.1.p 480 EALHYYSSLFDSLEGSGMIPRSQDLVMSELYLGRHICNVVACEGADRVERHEALAQWRTRLDSAGFDPVHLGSNAFKQASMLLALFA 566
                             *************9888888999**************************************************************** PP

                    GRAS 346 .sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              +dgyrvee++g+l+lgW++rpL+++SaWr
  SapurV1A.0102s0220.1.p 567 gGDGYRVEENNGCLMLGWHTRPLIATSAWR 596
                             *****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120415.3E-3640105IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011291.9E-3640111No hitNo description
PROSITE profilePS5098567.681207575IPR005202Transcription factor GRAS
PfamPF035141.5E-135233596IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MKRDHQETIG NKAESSSSSM DTGKGKSWFE DDQDAGGGMD ELLAVLGYKI KSSDMADVAQ  60
KLEQLEMVLG SEDGISHLAS DTVHYNPSDL SGWVQSMLSE FNNLPSTDFD SSILLSSNRD  120
SLLGQPSAIT SLDFSRNSQS KVFTDDSEYD LRAIPGVAAF PQQEFDRSND RKRVKLTPIG  180
SDTAPAPAVN SLQSPTASST STSSPQAMAV SGTLSGPTRP VVLMDSQETG VRLVHTLLAC  240
AKETQEENLE LADALVKRIG LLAASQTGAM RKVATYFAEA LARRIYKISP QDYRLDSSCL  300
DTLEMHFYET CPYLKFAHFT ANQAILEAFA DASRVHVIDF GLKQGMQWPA LMQALALRPG  360
GPPAFRLTGI GPPQPDNTDA LQQVGWKLAQ LARTIGVEFQ FRGFVANSLA DLDAEMLGLL  420
PPEVEAVAVN SVFELHRLLA RPGGIDKVLG SIKAMRPKIV TVVEQEANHN SPVFLDRFTE  480
ALHYYSSLFD SLEGSGMIPR SQDLVMSELY LGRHICNVVA CEGADRVERH EALAQWRTRL  540
DSAGFDPVHL GSNAFKQASM LLALFAGGDG YRVEENNGCL MLGWHTRPLI ATSAWRLAAG  600
DSQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-662165951377Protein SCARECROW
5b3h_D9e-662165951377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0102s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002305198.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLU5GFQ30.0U5GFQ3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s08890.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80334121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein