PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0100s0120.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 306aa    MW: 32983.7 Da    PI: 6.6281
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0100s0120.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12251296555
                             HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  SapurV1A.0100s0120.1.p 251 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 296
                             99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16244303IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.47E-14244300No hitNo description
PROSITE profilePS5088817.39246295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.1E-16248302IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9251296IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13252301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRPCSREMQG MNSLLNPSSQ IPLQDLQNQQ IQNSHFDPNL SSNEDFLEQM LSSCSWADPK  60
SPWDLNPPTN LPFPTNNSSS SAKHRDLFNE TPSSNSDSNN VGFRNNFDES VILASKLRQH  120
QISCGNGAAV SDAAKMMLPQ QLLMAVARGG LSLNDDIDGS LSQGGDGSIQ GLFNGFGAGS  180
MSGTDGASNQ SMQHFNHPQG GAMQSPNLGA QGAPATTAVM NQPQASGSNG GAPAQPRQRV  240
RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD KASMLDEIID YVKFLQLQVK  300
VLIFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255260RLRRER
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0100s0120.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033445.10.0PREDICTED: transcription factor bHLH66-like
TrEMBLA0A2K2A4B60.0A0A2K2A4B6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s20070.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47783352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30980.11e-21LJRHL1-like 2