PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0096s0360.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 249aa    MW: 28612.4 Da    PI: 8.2384
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0096s0360.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.19.8e-192269148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            +g+WT+eEd ll ++v+++G g+W+++ar  g++R +k+c++rw +yl
  SapurV1A.0096s0360.1.p 22 KGPWTAEEDRLLTEYVRLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 69
                            79********************************************97 PP
2Myb_DNA-binding50.64.4e-1675119147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  SapurV1A.0096s0360.1.p  75 RGQITPLEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 119
                             67889*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8151773IPR017930Myb domain
SuperFamilySSF466898.24E-3019116IPR009057Homeodomain-like
SMARTSM007172.1E-162171IPR001005SANT/Myb domain
PfamPF002494.9E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-232376IPR009057Homeodomain-like
CDDcd001671.09E-112469No hitNo description
SMARTSM007174.7E-1474122IPR001005SANT/Myb domain
PROSITE profilePS5129418.9274124IPR017930Myb domain
PfamPF002491.4E-1375119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2377123IPR009057Homeodomain-like
CDDcd001671.75E-979120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MSWGAMAGQL RWGGLIEEGW RKGPWTAEED RLLTEYVRLH GEGRWNSVAR LAGLKRNGKS  60
CRLRWVNYLR PDLKRGQITP LEESIIVELH ARWGNRWSTI ARSLPGRTDN EIKNYWRTHF  120
KKKAKISPEN SDKHQQQLQQ QQIQNQQLLQ LNQLDMKKIM SFIDENENKA PFTPHTRQEM  180
APHAVHPSTT EEQGLLYNMF CVNASAPEAS NEDMLWDGLW NLDDFHGDLG VACAASRACL  240
HNLVAPFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-27912414128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0096s0360.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311700.11e-142transcription factor MYB2
TrEMBLB9HKW31e-141B9HKW3_POPTR; Uncharacterized protein
STRINGPOPTR_0008s17350.11e-142(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.12e-83myb domain protein 305