PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0094s0540.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 298aa    MW: 34181.4 Da    PI: 6.3972
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0094s0540.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.44.2e-51201501128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                             l pGfrFhPtdeelv +yLkkkve+k++++ + ik+vd+yk+ePwdLpk  +++a+e+ewyfF++r +ky+++ r+nr+t+sg+Wka
  SapurV1A.0094s0540.1.p  20 LLPGFRFHPTDEELVGFYLKKKVEKKPIRI-DLIKHVDVYKYEPWDLPKeaSCSAGEREWYFFCRRGRKYKNSIRPNRVTRSGFWKA 105
                             579***************************.99**************95346667999***************************** PP

                     NAM  86 tgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128
                             tg dk+++s ++ +  +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  SapurV1A.0094s0540.1.p 106 TGIDKPIYSVGKMHycIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 150
                             *********8555466***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.39120181IPR003441NAC domain
SuperFamilySSF1019415.23E-5320180IPR003441NAC domain
PfamPF023653.4E-2622150IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MELDRLGTCS KDVEEDDDIL LPGFRFHPTD EELVGFYLKK KVEKKPIRID LIKHVDVYKY  60
EPWDLPKEAS CSAGEREWYF FCRRGRKYKN SIRPNRVTRS GFWKATGIDK PIYSVGKMHY  120
CIGLKKSLVY YRGSAGKGTK TDWMMHEFRL PACENTASLT NPGDCNIHEA EVWTLCRIFQ  180
REAPLNKKYL SSKQQCASTD SSASPCESDN RIHSDESFEF SANNKVIERQ ATNDHFYGNN  240
NQSFAAQMSL TNQVPFTTSY LSFSNQNGDQ LFAGENWDEL TPMVEFALDP SDIFCII*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-452018215169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0094s0540.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN7069063e-95JN706906.1 Populus fremontii isolate FCC02 locus 424060 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024466158.10.0transcription factor JUNGBRUNNEN 1 isoform X1
TrEMBLA0A3N7E8760.0A0A3N7E876_POPTR; Uncharacterized protein
STRINGPOPTR_0003s14950.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101334112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.13e-85NAC domain containing protein 42