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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0094s0280.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | bHLH | ||||||||
Protein Properties | Length: 472aa MW: 52786.2 Da PI: 7.1315 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.4 | 1.1e-12 | 295 | 340 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+r+N++f Lr+++P+ K++Ka+ L A YIk+L SapurV1A.0094s0280.1.p 295 NHVEAERQRRERLNHRFYALRSVVPNV-----SKMDKASLLADAATYIKEL 340 799***********************6.....5****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 4.0E-43 | 24 | 197 | IPR025610 | Transcription factor MYC/MYB N-terminal |
CDD | cd00083 | 4.28E-14 | 289 | 344 | No hit | No description |
SuperFamily | SSF47459 | 5.76E-18 | 290 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 17.028 | 291 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 9.6E-17 | 295 | 356 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.9E-10 | 295 | 340 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-16 | 297 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEEILSSSSS SSLMSFAQET SSTLQQRLQF VLHSRPEWWV YSIFWQAAKD AGGRLVLSLG 60 DGHFRGNKKY ASKEGNEQNH SKFGFSLERK SLFNEDMDMD RLVEGDHVAE WYYTLSVTRA 120 FAVGDGILGR AFSSGAFIWL TGDHELQIYD CERVKEARMH GIQTFVCVST PSGVLELGSP 180 DLIGEDWGLV QLAKSVFGAD INAGSVPKQA NQESQPQIPN RTFSNFLDTG MFSSVQKERT 240 SLEKQKESET REEPTGQGRS SSDSGRSDSD AGFTENNTGF KKRGRKPGEK ELPLNHVEAE 300 RQRRERLNHR FYALRSVVPN VSKMDKASLL ADAATYIKEL KSKVNELEGK LRAVSKKSRI 360 SGNANIYDNQ STSTSTMKNH IRPTPNYMSN NQMEVDVKIL GSEALVRVQS PDVNYPAARL 420 MDSLRDLEFP VHHASVSKVK ELVLQDVVIR VPDGLVTEEV MRAAIFQRMQ N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rqw_A | 3e-23 | 23 | 197 | 8 | 192 | Transcription factor MYC3 |
4rqw_B | 3e-23 | 23 | 197 | 8 | 192 | Transcription factor MYC3 |
4rs9_A | 3e-23 | 23 | 197 | 8 | 192 | Transcription factor MYC3 |
4yz6_A | 3e-23 | 23 | 197 | 8 | 192 | Transcription factor MYC3 |
5gnj_A | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_B | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_E | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_F | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_G | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_I | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_M | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
5gnj_N | 2e-23 | 290 | 344 | 3 | 57 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 300 | 305 | RQRRER |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0094s0280.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU283597 | 0.0 | GU283597.1 Populus balsamifera isolate MGR10 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. | |||
GenBank | GU283599 | 0.0 | GU283599.1 Populus balsamifera isolate POR11 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. | |||
GenBank | GU283603 | 0.0 | GU283603.1 Populus balsamifera isolate HAY07 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. | |||
GenBank | GU283607 | 0.0 | GU283607.1 Populus balsamifera isolate LOV02 haplotype B basic helix-loop-helix (bHLH) protein RAP1 gene, partial sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002299425.1 | 0.0 | transcription factor MYC4 | ||||
TrEMBL | B9GK72 | 0.0 | B9GK72_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11400.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF841 | 34 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00870.1 | 3e-65 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0094s0280.1.p |