PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0094s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | MYB | ||||||||
Protein Properties | Length: 252aa MW: 27812.7 Da PI: 9.4067 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.8e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WTt Ed ll+++++ +G g+W++ a++ g+ R++k+c++rw++yl SapurV1A.0094s0010.1.p 14 RGPWTTKEDTLLINYIQAHGEGHWRSLAKKAGLLRCGKSCRLRWLNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 25.5 | 3e-08 | 67 | 101 | 1 | 37 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37 rg+ T++Ed+l+++++ +lG++ W++Ia ++ ++ SapurV1A.0094s0010.1.p 67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRFK-RLMK 101 7999******************.*****9998.6655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-22 | 6 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.248 | 9 | 65 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.0E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.65E-25 | 15 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.47E-11 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 65 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 7.15 | 66 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 0.32 | 66 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-6 | 67 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00668 | 71 | 93 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGRAPYCSKD GLYRGPWTTK EDTLLINYIQ AHGEGHWRSL AKKAGLLRCG KSCRLRWLNY 60 LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRFKRLM KNSTAGNKSQ CMGGSAGKRR 120 GDKRKQKEDS DGISGRNGEA AAKIKIYLPK AIKACPSSCT KNLSNIQSMI GSSPRNVEVV 180 DHIMSGLKAA NNGGQGWGSN NEELDGLVWD LDSSYPIPLQ NDIMLDDIFG EFQQLLKEDG 240 IMDSFVDSLL A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 5e-17 | 12 | 102 | 25 | 118 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 124 | RRGDKRK |
2 | 118 | 125 | RRGDKRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0094s0010.1.p |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011026986.1 | 1e-125 | PREDICTED: myb-related protein P-like | ||||
TrEMBL | B9GL11 | 1e-122 | B9GL11_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s11100.1 | 1e-123 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16720.1 | 3e-46 | myb domain protein 7 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0094s0010.1.p |