PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0093s0250.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 305aa    MW: 33826.1 Da    PI: 6.6972
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0093s0250.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.39.8e-153174146
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                            rg++++ E++ ++d+++ lG++ W+ I+++++ gRt++++k++w++
  SapurV1A.0093s0250.2.p 31 RGSFSALEEQVIIDVHRILGNR-WAQISKHLP-GRTDNEVKNFWNS 74
                            899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.193125IPR017877Myb-like domain
SuperFamilySSF466891.09E-191184IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-51124IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-232580IPR009057Homeodomain-like
PROSITE profilePS5129423.5482680IPR017930Myb domain
SMARTSM007172.0E-143078IPR001005SANT/Myb domain
PfamPF002494.4E-133174IPR001005SANT/Myb domain
CDDcd001672.61E-103376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MIDCSVLAGL KRCGKSCRLR WLNYLRPELK RGSFSALEEQ VIIDVHRILG NRWAQISKHL  60
PGRTDNEVKN FWNSRLKKKL MAQGLDPKTH NLIPTRQRAA NKVACSMSPS NHEPFSITSH  120
DSKMKDVSLE INPPILTIVS PDYPSNCSPQ PPFFQTTTSL PLPKSSYDNP SVIWNANSQN  180
SYDSSLFTCV SSIHENSLAS SSSSSSANPT GFGLVDENCF WSCSNIVEPF EAAKIFESVP  240
PQDRENHLNK VCDTQIVGKN KGVQDNMEAS FDTSSYDLGL VDSTLFPGSM CHDLSSMDDL  300
AWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23128040108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0093s0250.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011014238.11e-174PREDICTED: myb-related protein 330-like
TrEMBLB9HYC11e-170B9HYC1_POPTR; Uncharacterized protein
STRINGPOPTR_0010s18170.11e-144(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.19e-52myb domain protein 67