![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0092s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | NF-YC | ||||||||
Protein Properties | Length: 219aa MW: 24717 Da PI: 6.4165 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 166.6 | 3.2e-52 | 38 | 141 | 2 | 102 |
NF-YC 2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtr 85 +sfw++q i+k+tdfknh+lPlarikki+ka+edvkmisaeaPv++++ace+fileltl+sw+h+eenkrrtl+k+diaaa+tr SapurV1A.0092s0230.1.p 38 RQSFWTNQykeIDKVTDFKNHSLPLARIKKIMKAEEDVKMISAEAPVIFARACEMFILELTLQSWNHTEENKRRTLQKNDIAAAITR 124 589****999999************************************************************************** PP NF-YC 86 tdifdflvdivprdelk 102 tdifd+lvdivpr+++k SapurV1A.0092s0230.1.p 125 TDIFDLLVDIVPREDMK 141 *************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 6.37E-32 | 21 | 131 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 2.6E-36 | 52 | 123 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-20 | 59 | 122 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MDQQGYGTNP YQPNHMPAAS NPGSQIHQQQ QQQLQQQRQS FWTNQYKEID KVTDFKNHSL 60 PLARIKKIMK AEEDVKMISA EAPVIFARAC EMFILELTLQ SWNHTEENKR RTLQKNDIAA 120 AITRTDIFDL LVDIVPREDM KDEALASIPR GTIPVGGPVD ALPYCYMPHP HASQVGNPGM 180 IMGKPVTDPA MYAQQSHPYM AQHMWPQGSE QQPSPSDH* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 4e-59 | 44 | 137 | 2 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 109 | 115 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Interacts with REF6 to directly regulate SOC1 transcription in response to flowering signals from photoperiod and gibberellic acid pathways (PubMed:25105952). {ECO:0000250, ECO:0000269|PubMed:25105952}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0092s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011023571.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Refseq | XP_011023572.1 | 1e-142 | PREDICTED: nuclear transcription factor Y subunit C-3-like | ||||
Swissprot | Q8L4B2 | 4e-84 | NFYC9_ARATH; Nuclear transcription factor Y subunit C-9 | ||||
TrEMBL | B9I7X7 | 1e-139 | B9I7X7_POPTR; NF-YC family protein | ||||
STRING | POPTR_0013s02580.1 | 1e-140 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1257 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G08970.4 | 7e-84 | nuclear factor Y, subunit C9 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0092s0230.1.p |