PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0089s0660.7.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 635aa MW: 73808.2 Da PI: 6.5664

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0089s0660.7.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70.7	3.5e-22	11	102	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ SapurV1A.0089s0660.7.p 11 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNV 96 59******************8888.***************************************99877789***** PP FAR1 85 HnHela 90 HnHel SapurV1A.0089s0660.7.p 97 HNHELL 102 **96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-20	11	102	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.7E-19	234	326	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.718	506	541	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.4E-4	514	540	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0021	516	543	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 635 aa Download sequence Send to blast
MVFKSDDDAF EYYGNFARKN GFSIRKERSR LSPQLGIYKR DFVCYRSGFA PARKKSTAEH 60 HRDRKSVRCG CDAKMYLSKE VVEGVSQWFV VQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 120 QERILLLSKA GFPIHRIVKV LELEKGIQGG QLPFLERDVR NFVQNRKKIV QENDALLTEK 180 RENDTMELLE ACKVTKEMDG EFVYDFTMDE NDKVENIVWS YGDSVRAYTL FGDVVYFDTS 240 YRSITYGMHL GVWLGIDNNG KTILFGCVLL QDETARSFGW ALQAFIRLMK GKCPQTILTD 300 LELGLKDAVR SELPSTRHAI SIWNIQPKIS SWFFLSLGPR YPELKSMFDD LYHAENADDF 360 EHRWSQMVSM FGLGSDKHIA LLYSLRASWA SSYMRGYFLA RMATSAYLKS VESFLKAICC 420 AQTCLRSFFE QVGSSSNFLN QLRQEMQYML TKTCIPLEEH ARNFLTPFAF NDFQHELVLS 480 MQCALSEMPD GSYLVHHYKK MDAERLVIWI PEDEQILCTC KEFESSGMLC RHTLRVFILK 540 NYFQLPEKYY LSRWRRESSL VFYDNQSTQT NDDGWFQEFE SLTETLLTES SITKERSDYV 600 RRELPKELKR LISEVRKIPE TDGAAMDLTL SPSG*

Sequence ? help Back to Top

Protein Sequence Length: 635 aa Download sequence Send to blast

MVFKSDDDAF EYYGNFARKN GFSIRKERSR LSPQLGIYKR DFVCYRSGFA PARKKSTAEH  60
HRDRKSVRCG CDAKMYLSKE VVEGVSQWFV VQFSNVHNHE LLEDDQVRLL PAYRKIQEAD  120
QERILLLSKA GFPIHRIVKV LELEKGIQGG QLPFLERDVR NFVQNRKKIV QENDALLTEK  180
RENDTMELLE ACKVTKEMDG EFVYDFTMDE NDKVENIVWS YGDSVRAYTL FGDVVYFDTS  240
YRSITYGMHL GVWLGIDNNG KTILFGCVLL QDETARSFGW ALQAFIRLMK GKCPQTILTD  300
LELGLKDAVR SELPSTRHAI SIWNIQPKIS SWFFLSLGPR YPELKSMFDD LYHAENADDF  360
EHRWSQMVSM FGLGSDKHIA LLYSLRASWA SSYMRGYFLA RMATSAYLKS VESFLKAICC  420
AQTCLRSFFE QVGSSSNFLN QLRQEMQYML TKTCIPLEEH ARNFLTPFAF NDFQHELVLS  480
MQCALSEMPD GSYLVHHYKK MDAERLVIWI PEDEQILCTC KEFESSGMLC RHTLRVFILK  540
NYFQLPEKYY LSRWRRESSL VFYDNQSTQT NDDGWFQEFE SLTETLLTES SITKERSDYV  600
RRELPKELKR LISEVRKIPE TDGAAMDLTL SPSG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0089s0660.7.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443550.1	0.0	putative protein FAR1-RELATED SEQUENCE 10 isoform X2
Swissprot	Q9LKR4	0.0	FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBL	A0A3N7G1N4	0.0	A0A3N7G1N4_POPTR; Uncharacterized protein
STRING	XP_002525089.1	0.0	(Ricinus communis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28530.1	0.0	FAR1-related sequence 10

Link Out ? help Back to Top
Phytozome	SapurV1A.0089s0660.7.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]