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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0089s0660.6.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 635aa MW: 73808.2 Da PI: 6.5664 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.7 | 3.5e-22 | 11 | 102 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ SapurV1A.0089s0660.6.p 11 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNV 96 59********************8888.*******************************************99877789********* PP FAR1 85 HnHela 90 HnHel SapurV1A.0089s0660.6.p 97 HNHELL 102 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.1E-20 | 11 | 102 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.7E-19 | 234 | 326 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.718 | 506 | 541 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.4E-4 | 514 | 540 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0021 | 516 | 543 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 635 aa Download sequence Send to blast |
MVFKSDDDAF EYYGNFARKN GFSIRKERSR LSPQLGIYKR DFVCYRSGFA PARKKSTAEH 60 HRDRKSVRCG CDAKMYLSKE VVEGVSQWFV VQFSNVHNHE LLEDDQVRLL PAYRKIQEAD 120 QERILLLSKA GFPIHRIVKV LELEKGIQGG QLPFLERDVR NFVQNRKKIV QENDALLTEK 180 RENDTMELLE ACKVTKEMDG EFVYDFTMDE NDKVENIVWS YGDSVRAYTL FGDVVYFDTS 240 YRSITYGMHL GVWLGIDNNG KTILFGCVLL QDETARSFGW ALQAFIRLMK GKCPQTILTD 300 LELGLKDAVR SELPSTRHAI SIWNIQPKIS SWFFLSLGPR YPELKSMFDD LYHAENADDF 360 EHRWSQMVSM FGLGSDKHIA LLYSLRASWA SSYMRGYFLA RMATSAYLKS VESFLKAICC 420 AQTCLRSFFE QVGSSSNFLN QLRQEMQYML TKTCIPLEEH ARNFLTPFAF NDFQHELVLS 480 MQCALSEMPD GSYLVHHYKK MDAERLVIWI PEDEQILCTC KEFESSGMLC RHTLRVFILK 540 NYFQLPEKYY LSRWRRESSL VFYDNQSTQT NDDGWFQEFE SLTETLLTES SITKERSDYV 600 RRELPKELKR LISEVRKIPE TDGAAMDLTL SPSG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0089s0660.6.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024443550.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X2 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A3N7G1N4 | 0.0 | A0A3N7G1N4_POPTR; Uncharacterized protein | ||||
STRING | XP_002525089.1 | 0.0 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0089s0660.6.p |
Publications ? help Back to Top | |||
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