PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0089s0660.5.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 80211.4 Da PI: 6.2565 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.5 | 4e-22 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk+t +++r r++ r+gC+ak+ ++ke ++w v ++++ SapurV1A.0089s0660.5.p 68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNV 153 59********************8888.*******************************************99877789********* PP FAR1 85 HnHela 90 HnHel SapurV1A.0089s0660.5.p 154 HNHELL 159 ****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.8E-20 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.0E-19 | 291 | 383 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.718 | 563 | 598 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.7E-4 | 571 | 597 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0021 | 573 | 600 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNETFQSDS MVSPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER 180 ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN 240 DTMELLEACK VTKEMDGEFV YDFTMDENDK VENIVWSYGD SVRAYTLFGD VVYFDTSYRS 300 ITYGMHLGVW LGIDNNGKTI LFGCVLLQDE TARSFGWALQ AFIRLMKGKC PQTILTDLEL 360 GLKDAVRSEL PSTRHAISIW NIQPKISSWF FLSLGPRYPE LKSMFDDLYH AENADDFEHR 420 WSQMVSMFGL GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT 480 CLRSFFEQVG SSSNFLNQLR QEMQYMLTKT CIPLEEHARN FLTPFAFNDF QHELVLSMQC 540 ALSEMPDGSY LVHHYKKMDA ERLVIWIPED EQILCTCKEF ESSGMLCRHT LRVFILKNYF 600 QLPEKYYLSR WRRESSLVFY DNQSTQTNDD GWFQEFESLT ETLLTESSIT KERSDYVRRE 660 LPKELKRLIS EVRKIPETDG AAMDLTLSPS G* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0089s0660.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006373590.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_024443543.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_024443544.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_024443545.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_024443546.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_024443547.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Refseq | XP_024443549.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 isoform X1 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A3N7G1P2 | 0.0 | A0A3N7G1P2_POPTR; Uncharacterized protein | ||||
STRING | EOY28958 | 0.0 | (Theobroma cacao) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0089s0660.5.p |
Publications ? help Back to Top | |||
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