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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0089s0540.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YB | ||||||||
Protein Properties | Length: 197aa MW: 20983.2 Da PI: 6.511 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 184.5 | 8.5e-58 | 22 | 117 | 2 | 97 |
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 reqdr+lPianvsrimkk+lPanakiskdaketvqecvsefisf+t+easdkcqrekrktingddllwa++tlGfedyveplk+yl+ SapurV1A.0089s0540.1.p 22 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKIYLQ 108 89************************************************************************************* PP NF-YB 89 kyrelegek 97 k+re+egek SapurV1A.0089s0540.1.p 109 KFREMEGEK 117 *******97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 4.3E-55 | 15 | 120 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.47E-41 | 24 | 120 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.2E-27 | 27 | 91 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 2.4E-21 | 55 | 73 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 58 | 74 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 2.4E-21 | 74 | 92 | No hit | No description |
PRINTS | PR00615 | 2.4E-21 | 93 | 111 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MADSDNESGG HNNSNTNESS PREQDRLLPI ANVSRIMKKA LPANAKISKD AKETVQECVS 60 EFISFITGEA SDKCQREKRK TINGDDLLWA MTTLGFEDYV EPLKIYLQKF REMEGEKTAA 120 MGIVRQGDGR DGAAVGGGDG SVVNSGNSGG GFGGSGGDMY VGMQPSMAMM GHHHYHHHHQ 180 GNMYGSGSGA SSGRPR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_B | 3e-48 | 22 | 112 | 2 | 92 | Transcription factor HapC (Eurofung) |
4g92_B | 3e-48 | 22 | 112 | 2 | 92 | Transcription factor HapC (Eurofung) |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0089s0540.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210129 | 1e-174 | AC210129.1 Populus trichocarpa clone POP009-F11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002323121.2 | 1e-116 | nuclear transcription factor Y subunit B-3 | ||||
Swissprot | O23310 | 6e-74 | NFYB3_ARATH; Nuclear transcription factor Y subunit B-3 | ||||
TrEMBL | B9IH15 | 1e-114 | B9IH15_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s00780.1 | 1e-115 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF591 | 34 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G14540.1 | 2e-75 | nuclear factor Y, subunit B3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0089s0540.1.p |
Publications ? help Back to Top | |||
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